AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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RSS GRASSCARP-R7VCEI

SpeciesGRASSCARP
TypeV-RS · complete signal, 3' of V (39 nt)
Sources IMGT
CACAGTG HEPTAMER 7 nt ACACAGAGCAGTTACTGCCTTGT spacer · 23 nt TCAAAAACA NONAMER 9 nt
Heptamer Spacer (23 nt) Nonamer

RSS spacer length determines pairing under the 12/23 rule, so it follows the locus rather than the segment: a 12 nt RSS recombines with a 23 nt RSS.

39 nt
CACAGTGACACAGAGCAGTTACTGCCTTGTTCAAAAACA

Find similar RSS

Alleles with this RSS variant

6 coding allele(s) linked to this exact RSS. The Source column shows which source recorded each allele–RSS pairing. Source coverage of allele to RSS pairings is source-specific.

Allele nameSpeciesLocus Source of this allele–RSS linkServer UID
IGHV5-132*01 GRASSCARP IGH IMGT GRASSCARP-VZOSVRI3Y
IGHV5-67*01 GRASSCARP IGH IMGT GRASSCARP-VO2NCA4XR
IGHV5-78*01 GRASSCARP IGH IMGT GRASSCARP-VYYNDLII4
IGHV5-83*01 GRASSCARP IGH IMGT GRASSCARP-VGBAZU4PS
IGHV5-88*01 GRASSCARP IGH IMGT GRASSCARP-VJJE6QHU7
IGHV5-94*01 GRASSCARP IGH IMGT GRASSCARP-V6S7QWK3E