AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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RSS ORANGSUM-RAIL2W

SpeciesORANGSUM
TypeV-RS · complete signal, 3' of V (39 nt)
Sources IMGT
CACAGTG HEPTAMER 7 nt AGGGGAGGTGAGTGTGAGCCCAG spacer · 23 nt ACAAAAACC NONAMER 9 nt
Heptamer Spacer (23 nt) Nonamer

RSS spacer length determines pairing under the 12/23 rule, so it follows the locus rather than the segment: a 12 nt RSS recombines with a 23 nt RSS.

39 nt
CACAGTGAGGGGAGGTGAGTGTGAGCCCAGACAAAAACC

Find similar RSS

Alleles with this RSS variant

12 coding allele(s) linked to this exact RSS. The Source column shows which source recorded each allele–RSS pairing. Source coverage of allele to RSS pairings is source-specific.

Allele nameSpeciesLocus Source of this allele–RSS linkServer UID
IGHV4-101*01 ORANGSUM IGH IMGT ORANGSUM-VNHPQFOZQ
IGHV4-101*02 ORANGSUM IGH IMGT ORANGSUM-VGCCFCRVU
IGHV4-103-1*01 ORANGSUM IGH IMGT ORANGSUM-V7V2JOZNG
IGHV4-103-3*02 ORANGSUM IGH IMGT ORANGSUM-VR5OMOZ4R
IGHV4-104*03 ORANGSUM IGH IMGT ORANGSUM-VLXGIJRJX
IGHV4-109*01 ORANGSUM IGH IMGT ORANGSUM-VKX2PLX53
IGHV4-109*02 ORANGSUM IGH IMGT ORANGSUM-V2EEAJLUZ
IGHV4-55*02 ORANGSUM IGH IMGT ORANGSUM-VPIVO4OSN
IGHV4-95*01 ORANGSUM IGH IMGT ORANGSUM-VEA4UMW3W
IGHV4-95*02 ORANGSUM IGH IMGT ORANGSUM-VPYWAI2BA
IGHV4-99*01 ORANGSUM IGH IMGT ORANGSUM-V5R7NNK4N
IGHV4-99*02 ORANGSUM IGH IMGT ORANGSUM-VCJ43P6K7