AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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RSS ORANGSUM-RI4XC5

SpeciesORANGSUM
TypeV-RS · complete signal, 3' of V (28 nt)
Sources IMGT
CACAGTG HEPTAMER 7 nt TTACACACCCGA spacer · 12 nt ACATAAACC NONAMER 9 nt
Heptamer Spacer (12 nt) Nonamer

RSS spacer length determines pairing under the 12/23 rule, so it follows the locus rather than the segment: a 12 nt RSS recombines with a 23 nt RSS.

28 nt
CACAGTGTTACACACCCGAACATAAACC

Find similar RSS

Alleles with this RSS variant

7 coding allele(s) linked to this exact RSS. The Source column shows which source recorded each allele–RSS pairing. Source coverage of allele to RSS pairings is source-specific.

Allele nameSpeciesLocus Source of this allele–RSS linkServer UID
IGKV1-13-1*01 ORANGSUM IGK IMGT ORANGSUM-VYH6HB242
IGKV1-14*01 ORANGSUM IGK IMGT ORANGSUM-VAL5IJ7CX
IGKV1-16*01 ORANGSUM IGK IMGT ORANGSUM-VROVJH6HJ
IGKV1-16*02 ORANGSUM IGK IMGT ORANGSUM-VNM66FPIC
IGKV1-23*01 ORANGSUM IGK IMGT ORANGSUM-VXBBPRYI4
IGKV1-23*02 ORANGSUM IGK IMGT ORANGSUM-VS5N4HA2S
IGKV1-28*01 ORANGSUM IGK IMGT ORANGSUM-VI6YZN6FY