AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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RSS RAT-RDEVXQ

SpeciesRAT
TypeV-RS · complete signal, 3' of V (39 nt)
Sources IMGT
CACACTG HEPTAMER 7 nt ACACAGCCTCAGTTTTCAGCTGT spacer · 23 nt ACAGTATTT NONAMER 9 nt
Heptamer Spacer (23 nt) Nonamer

RSS spacer length determines pairing under the 12/23 rule, so it follows the locus rather than the segment: a 12 nt RSS recombines with a 23 nt RSS.

39 nt
CACACTGACACAGCCTCAGTTTTCAGCTGTACAGTATTT

Find similar RSS

Alleles with this RSS variant

4 coding allele(s) linked to this exact RSS. The Source column shows which source recorded each allele–RSS pairing. Source coverage of allele to RSS pairings is source-specific.

Allele nameSpeciesLocus Source of this allele–RSS linkServer UID
IGHV8-21*01 RAT IGH IMGT RAT-VZPSOGM5L
IGHV8-28*01 RAT IGH IMGT RAT-V7SL6QJ3V
IGHV8-29*01 RAT IGH IMGT RAT-VIHPSWCM2
IGHV8-31*01 RAT IGH IMGT RAT-V6PW6NLWK