AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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RSS RHESUS-RJQSPZ

SpeciesRHESUS
TypeV-RS · complete signal, 3' of V (38 nt)
Sources MUSA
GACAGTG HEPTAMER 7 nt AGGGGAGTCAGTGTGAGCCCGG spacer · 22 nt ACACAAACC NONAMER 9 nt
Heptamer Spacer (22 nt) Nonamer

RSS spacer length determines pairing under the 12/23 rule, so it follows the locus rather than the segment: a 12 nt RSS recombines with a 23 nt RSS.

38 nt
GACAGTGAGGGGAGTCAGTGTGAGCCCGGACACAAACC

Find similar RSS

Alleles with this RSS variant

3 coding allele(s) linked to this exact RSS. The Source column shows which source recorded each allele–RSS pairing. Source coverage of allele to RSS pairings is source-specific.

Allele nameSpeciesLocus Source of this allele–RSS linkServer UID
IGHV3-7FPK*01_i0caac_6tgga9_t11c_15tctt18_c20g_t21a_g22t_g25a_g26t_g32t_c33a_t35c_g36c_c40a_g42a_44--------51_55tctcc59_t64-_t69c_c71t_g73t_t76c_t78g_a81t_t82c_a85t_c87a_t88g_c90g_104caagtg109_c114t_a115g_t116g_g118a_a119g_c127t_a138-_a142g_a163g_i170taa_g172c_g173c_g176c_c177t_a184g_c194g_a197g_g216c_c223t_c237-_a238-_a245g_g286t_g289a_t296c_300------------ca313_a316t RHESUS IGH MUSA RHESUS-V7YVXF3KA
IGHV3-7FPK*01_i0caac_6tgga9_t11c_15tctt18_c20g_t21a_g22t_g25a_g26t_g32t_c33a_t35c_g36c_c40a_g42a_44--------51_55tctcc59_t64-_t69c_c71t_g73t_t76c_t78g_a81t_t82c_a85t_c87a_t88g_c90g_104caagtg109_c114t_a115g_t116g_g118a_a119g_c127t_a138-_a142g_a163g_i170taa_g172c_g173c_g176c_c177t_a184g_c194g_a197g_g216c_c223t_c237-_a238-_a245g_g289a_t296c_300------------ca313_a316t RHESUS IGH MUSA RHESUS-VANUQJXDY
IGHV3-N72G*01_g1a_g3c_g6c_c7a_g9c_c10g_t11a_a15t_a17g_g18a_t21g_23ttctt27_g31t_c33a_t35g_g37a_39agtat43_t45c_c47t_49aaact53_57ctccactc64_t69c_c71t_a73t_t76c_t78g_a81t_t82c_a85t_c87a_t88g_c90g_104caagtg109_c114t_a115g_t116g_g118a_a119g_c127t_a138-_a142g_a163g_c172a_a174t_g182c_g191a_c194g_a197g_g216c_c223t_c237-_a238-_a245g_c281t_g289a_a297g_300------------ca313_a316t RHESUS IGH MUSA RHESUS-VRVP2P6US