AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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RSS RHESUS-ROCOU6

SpeciesRHESUS
TypeV-RS · complete signal, 3' of V (38 nt)
Sources MUSA
ATCAATG HEPTAMER 7 nt TTGTAAATATTTTGGAACACAA spacer · 22 nt ACACAAGTT NONAMER 9 nt
Heptamer Spacer (22 nt) Nonamer

RSS spacer length determines pairing under the 12/23 rule, so it follows the locus rather than the segment: a 12 nt RSS recombines with a 23 nt RSS.

38 nt
ATCAATGTTGTAAATATTTTGGAACACAAACACAAGTT

Find similar RSS

Alleles with this RSS variant

9 coding allele(s) linked to this exact RSS. The Source column shows which source recorded each allele–RSS pairing. Source coverage of allele to RSS pairings is source-specific.

Allele nameSpeciesLocus Source of this allele–RSS linkServer UID
IGHV1-F5R3*02_c6g_c7t_c21t_c43t_c69g_t78c_g79a_t105c_c110a_c113t_g120c_g133a_c134a_c136t_c137t_a159g_164tttagt169_c171a_a172t_g176a_c177g_185gatt188_a190t_a191t_c194a_a196t_198------g204_207ttta210_g216t_g220a_g221a_t222g_g226a_c228t_a229t_231agag234_236ttgta240_243---a246_c248g_c249a_c251t_g252c_254aatt257_g259a_c261a_c264t_a265c_g268a_a269t_g270a_t272a_g275a_a277t_g278t_g282c_a283t_g285a_t286a_c287t_291-------t298_c300t_g301t_306aaca309_311caattt316_a318t RHESUS IGH MUSA RHESUS-VIQI7UALF
IGHV1-F5R3*02_c6g_c21t_c44t_c69g_g79a_t88c_t105c_c110a_c113t_g120c_g133a_c134a_c137t_t158c_a159g_164tttagtaat172_g176a_c177g_a185g_t186a_g187t_a190t_a191t_c194t_a196t_198------203_207ttta210_c214t_a215g_g216t_g220a_g221a_t222g_g226a_c228t_a229t_c231a_a232g_t233g_236ttgta240_243---a246_c248g_c249a_c251t_g252c_254aatt257_g259a_c261a_t262a_c264t_a265c_g268a_a269t_g270a_t272a_g275a_a277t_g278t_g282c_a283t_g285a_t286a_c287t_291-------t298_c300t_g301t_306aaca309_311caattt316_a318t RHESUS IGH MUSA RHESUS-VNYZ2ODZ7
IGHV1-F5R3*02_c6g_c21t_c43t_c69g_t78c_g79a_t105c_c110a_c113t_g120c_g133a_c134a_c136t_c137t_a159g_164tttagt169_c171a_a172t_g176a_c177g_185gatt188_a190t_a191t_c194a_a196t_198------g204_207ttta210_g216t_g220a_g221a_t222g_g226a_c228t_a229t_231agag234_236ttgta240_243---a246_c248g_c249a_c251t_g252c_254aatt257_g259a_c261a_c264t_a265c_g268a_a269t_g270a_t272a_g275a_a277t_g278t_g282c_a283t_g285a_t286a_c287t_291-------t298_c300t_g301t_306aaca309_311caattt316_a318t RHESUS IGH MUSA RHESUS-V6QPLOLYY
IGHV1-2BLY*07_g49t_c69g_g79a_t88c_c90t_t105c_g106a_a107g_c111t_t112g_a113t_g133a_c134a_c137t_t158c_163ttttagt169_171atttg175_a177g_c185g_t186a_g187t_g190t_g191t_c194t_a196t_198----a202_c205t_a206t_g207t_a209t_g210t_t211c_c213g_c214t_g216a_g221c_c222a_g224a_a225t_g226t_230ggtattgt237_g241a_a242t_c243g_245atcaa249_c251t_g252t_g254a_c255g_c257a_g259t_c261t_t262g_c264t_t266c_g267a_g270a_273tcctctgaatc283_g289t_a290t_g292t_c294a_296----299_g301a_g303c_t304a_a308t_311--------318 RHESUS IGH MUSA RHESUS-VQFY2OBBC
IGHV1-2BLY*07_c7a_t11c_c44t_g49t_c69g_g79a_t88c_c90t_t105c_g106a_a107g_c111t_t112g_a113t_g133a_c134a_c137t_t158c_163ttttagt169_171atttg175_a177g_c185g_t186a_g187t_g190t_g191t_c194t_a196t_198----a202_c205t_a206t_g207t_a209t_g210t_t211c_c213g_c214t_g216a_g221c_c222a_g224a_a225t_g226t_230ggtattgt237_g241a_a242t_c243g_245atcaa249_c251t_g252t_g254a_c255g_c257a_g259t_c261t_t262g_c264t_t266c_g267a_g270a_273tcctctgaatc283_g289t_a290t_g292t_c294a_296----299_g301a_g303c_t304a_a308t_311--------318 RHESUS IGH MUSA RHESUS-VWHIDSKTS
IGHV1-2BLY*07_c7a_t11c_c44t_g49t_c69g_g79a_c90t_t105c_g106a_a107g_t112a_a113t_g133a_c134a_c135t_c137t_t158c_163ttttagt169_171atttg175_a177g_c185g_t186a_g187t_g190t_g191t_c194t_a196t_198----a202_c205t_a206t_g207t_a209t_g210t_t211c_c213g_c214t_g216a_g221c_c222a_g224a_a225t_g226t_230ggtattgt237_g241a_a242t_c243g_245atcaa249_c251t_g252t_g254a_c255g_c257a_g259t_c261t_t262g_c264t_t266c_g267a_g270a_273tcctctgaatc283_g289t_a290t_g292t_c294a_296----299_g301a_g303c_t304a_a308t_311--------318 RHESUS IGH MUSA RHESUS-VLOLJGY4V
IGHV1-2BLY*07_c44t_g49t_c69g_g79a_t88c_c90t_t105c_g106a_a107g_c111t_t112g_a113t_g133a_c134a_c137t_t158c_163ttttagt169_171atttg175_a177g_c185g_t186a_g187t_g190t_g191t_c194t_a196t_198----a202_c205t_a206t_g207t_a209t_g210t_t211c_c213g_c214t_g216a_g221c_c222a_g224a_a225t_g226t_230ggtattgt237_g241a_a242t_c243g_245atcaa249_c251t_g252t_g254a_c255g_c257a_g259t_c261t_t262g_c264t_t266c_g267a_g270a_273tcctctgaatc283_g289t_a290t_g292t_c294a_296----299_g301a_g303c_t304a_a308t_311--------318 RHESUS IGH MUSA RHESUS-VOOI5TL32
IGHV1-2BLY*03_c44t_c69g_g79a_t88c_c90t_t105c_g106a_a107g_c111t_t112g_a113t_g133a_c134a_c137t_t158c_163ttttagt169_171atttg175_a177g_c185g_t186a_g187t_g190t_g191t_c194t_a196t_198----a202_c205t_a206t_g207t_a209t_g210t_t211c_c213g_c214t_g216a_g221c_c222a_g224a_a225t_g226t_230ggtattgt237_g241a_a242t_c243g_245atcaa249_c251t_g252t_g254a_c255g_c257a_g259t_c261t_t262g_c264t_t266c_g267a_g270a_273tcctctgaatc283_g289t_a290t_g292t_c294a_296----299_g301a_g303c_t304a_a308t_311--------318 RHESUS IGH MUSA RHESUS-VVM32UVKG
IGHV1-2BLY*03_c44t_c69g_g79a_c90t_t105c_g106a_a107g_t112a_a113t_g133a_c134a_c137t_t158c_163ttttagt169_171atttg175_a177g_c185g_t186a_g187t_g190t_g191t_c194t_a196t_198----a202_c205t_a206t_g207t_a209t_g210t_t211c_c213g_c214t_g216a_g221c_c222a_g224a_a225t_g226t_230ggtattgt237_g241a_a242t_c243g_245atcaa249_c251t_g252t_g254a_c255g_c257a_g259t_c261t_t262g_c264t_t266c_g267a_g270a_273tcctctgaatc283_g289t_a290t_g292t_c294a_296----299_g301a_g303c_t304a_a308t_311--------318 RHESUS IGH MUSA RHESUS-VADJSLH7R