AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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RSS RHESUS-RTIKPR

SpeciesRHESUS
TypeV-RS · complete signal, 3' of V (39 nt)
Sources MUSA
CGCAAGG HEPTAMER 7 nt CGGGGACTTCATTGTGAGCCTAG spacer · 23 nt ACACAAACC NONAMER 9 nt
Heptamer Spacer (23 nt) Nonamer

RSS spacer length determines pairing under the 12/23 rule, so it follows the locus rather than the segment: a 12 nt RSS recombines with a 23 nt RSS.

39 nt
CGCAAGGCGGGGACTTCATTGTGAGCCTAGACACAAACC

Find similar RSS

Alleles with this RSS variant

2 coding allele(s) linked to this exact RSS. The Source column shows which source recorded each allele–RSS pairing. Source coverage of allele to RSS pairings is source-specific.

Allele nameSpeciesLocus Source of this allele–RSS linkServer UID
IGHV11-3ZCZ*01_3acaa6_a8t_10tgtttctca18_20gaca23_c25t_c26t_a27c_g31t_a33g_g36t_t38a_a41c_g42a_c43a_t45g_g48a_g57c_c65t_c66g_g70a_t81a_g83c_t85c_i86cgt_c90a_g92c_a106g_g107c_a109t_a110c_g114c_g116a_g119a_c120t_g123t_c127t_130----133_c137t_g140a_g141a_a142g_g144t_t149a_i158c_t159a_162tgcg165_167gggt170_g173t_t174g_g176a_t177g_c191a_g193a_c194t_203actt206_226------------237_a240t_g242t_a243c_g247a_t256a_t262-_c263-_c265t_g267a_a268c_t281c_a283t_c287g_c288t_c290a_g291a_g292c_c296-_g298a_c300t_g301a_t304c_a308t_c309t_g311a_t312a_c314-_g315a_g317a RHESUS IGH MUSA RHESUS-VZXALW2M4
IGHV4-6KBL*05_i0a_g3a_c7-_a8t_c10t_g12t_14tcat17_t19a_g21-_g22-_g23a_c25t_c26t_a27c_g31t_a33g_g36t_t38a_a41c_g42a_c43a_t45g_g48a_g57c_c65t_c66g_g70a_t81a_g83c_t85c_i86cgtcat_t87a_t89c_c105t_g107c_a110c_a113g_g116a_g119a_c120t_g123t_126----129_a131t_c137t_g140a_g141a_a142g_g144t_g147a_t149a_t159c_g160a_c163t_165cgag168_a170g_a172t_a175g_g176a_t177a_c195a_t196a_c198t_207actt210_g224c_226-------------238_g241t_a242c_g246a_c255a_c263-_c264-_c265-_g267a_a268c_t281c_a283t_c287g_c288t_c290a_g291a_g292c_g297-_g298a_c300t_g301a_t304c_a308t_c309t_g311a_t312a_c314-_g315a_g317a RHESUS IGH MUSA RHESUS-V7M55XJEI