AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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RSS RHESUS-RYUQXT

SpeciesRHESUS
TypeV-RS · complete signal, 3' of V (39 nt)
Sources MUSA
AACAGTG HEPTAMER 7 nt AAGATGTCAGTGTGATCCCAGAC spacer · 23 nt ACAAACTTC NONAMER 9 nt
Heptamer Spacer (23 nt) Nonamer

RSS spacer length determines pairing under the 12/23 rule, so it follows the locus rather than the segment: a 12 nt RSS recombines with a 23 nt RSS.

39 nt
AACAGTGAAGATGTCAGTGTGATCCCAGACACAAACTTC

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Alleles with this RSS variant

6 coding allele(s) linked to this exact RSS. The Source column shows which source recorded each allele–RSS pairing. Source coverage of allele to RSS pairings is source-specific.

Allele nameSpeciesLocus Source of this allele–RSS linkServer UID
IGHV4-6KBL*01_i0aa_a2c_g3a_c7-_a8t_c10t_g12t_g15t_a17-_21attta25_a27t_a33c_a41g_t45c_g48a_g49c_a50t_t56c_g57c_c69t_t81a_g82t_g83t_t87c_i89cacagc_g107c_a110c_g114c_c133t_c136t_g140t_g141c_145-----149_t159c_c163-_t165c_c168a_a170g_172-cac175_t177a_c195a_g196a_c198t_a200c_c201t_c207a_t208c_c209t_a215t_t222c_c223t_g224c_t234c_a237c_g241t_a242c_c245t_g252a_a253t_c255t_g258a_t259a_c261t_c263t_c265t_t266g_a268c_c276t_t281c_c285-_g286-_c288a_g289a_g291t_g297a_g298a_c299a_g301t_a308c_c309t_g313-_c314-_a320g RHESUS IGH MUSA RHESUS-VYQ2M76AU
IGHV4-6KBL*01_i0aa_a2c_g3a_c7-_a8t_c10t_g12t_g15t_a17-_21atttatt27_a33c_a41g_t45c_g48a_g49c_a50t_c55g_t56c_g57c_c69t_g79a_t81a_g82t_g83t_t87c_i89cacagc_g107c_a110c_g114c_g117t_c133t_c136t_g140t_g141c_145-----149_t159c_c163-_t165c_c168a_a170g_172-cac175_t177a_c195a_g196a_c198t_a200c_c201t_c207a_t208c_c209t_a215t_t222c_c223t_g224c_t234c_a237c_g241t_a242c_c245t_g252a_a253t_c255t_g258a_t259a_c261t_c263t_c265t_t266g_a268c_c276t_t281c_c285-_g286-_c288a_g289a_g291t_g297a_g298a_c299a_g301t_a308c_c309t_g313-_c314-_a320g RHESUS IGH MUSA RHESUS-VOTV4PL5A
IGHV4-6KBL*01_i0aa_a2c_g3a_c7-_a8t_c10t_g12t_g15t_a17-_21atttatt27_a33c_a41g_t45c_g48a_g49c_a50t_t56c_g57c_c69t_g79a_t81a_g82t_g83t_t87c_i89cacagc_g107c_a110c_g114c_c133t_c136t_g140t_g141c_145-----149_t159c_c163-_t165c_c168a_a170g_172-cac175_t177a_c195a_g196a_c198t_a200c_c201t_c207a_t208c_c209t_a215t_t222c_c223t_g224c_t234c_a237c_g241t_a242c_c245t_g252a_a253t_c255t_g258a_t259a_c261t_c263t_c265t_t266g_a268c_c276t_t281c_c285-_g286-_c288a_g289a_g291t_g297a_g298a_c299a_g301t_a308c_c309t_g313-_c314-_a320g RHESUS IGH MUSA RHESUS-V22EQAILW
IGHV4-6KBL*01_i0t_c1g_a2t_c4t_g6t_9-------tg17_21attta25_a27t_a33c_a41g_t45c_g48a_g49c_a50t_t56c_g57c_c69t_t81a_g82t_g83t_t87c_i89cacagc_g107c_a110c_g114c_c133t_c136t_g140t_g141c_145-----149_t159c_c163-_t165c_c168a_a170g_172-cac175_t177a_c195a_g196a_c198t_a200c_c201t_c207a_t208c_c209t_a215t_t222c_c223t_g224c_t234c_a237c_g241t_a242c_c245t_g252a_a253t_c255t_g258a_t259a_c261t_c263t_c265t_t266g_a268c_c276t_t281c_c285-_g286-_c288a_g289a_g291t_g297a_g298a_c299a_g301t_a308c_c309t_g313-_c314-_a320g RHESUS IGH MUSA RHESUS-VXPKVKJ3C
IGHV4-6KBL*01_i0t_c1g_a2t_c4t_g6t_9-------tg17_21atttatt27_a33c_a41g_t45c_g48a_g49c_a50t_c55g_t56c_g57c_c69t_g79a_t81a_g82t_g83t_t87c_i89cacagc_g107c_a110c_g114c_g117t_c133t_c136t_g140t_g141c_145-----149_t159c_c163-_t165c_c168a_a170g_172-cac175_t177a_c195a_g196a_c198t_a200c_c201t_c207a_t208c_c209t_a215t_t222c_c223t_g224c_t234c_a237c_g241t_a242c_c245t_g252a_a253t_c255t_g258a_t259a_c261t_c263t_c265t_t266g_a268c_c276t_t281c_c285-_g286-_c288a_g289a_g291t_g297a_g298a_c299a_g301t_a308c_c309t_g313-_c314-_a320g RHESUS IGH MUSA RHESUS-VB2NIOA7I
IGHV4-6KBL*01_i0t_c1g_a2t_c4t_g6t_9-------tg17_21atttatt27_a33c_a41g_t45c_g48a_g49c_a50t_t56c_g57c_c69t_g79a_t81a_g82t_g83t_t87c_i89cacagc_g107c_a110c_g114c_c133t_c136t_g140t_g141c_145-----149_t159c_c163-_t165c_c168a_a170g_172-cac175_t177a_c195a_g196a_c198t_a200c_c201t_c207a_t208c_c209t_a215t_t222c_c223t_g224c_t234c_a237c_g241t_a242c_c245t_g252a_a253t_c255t_g258a_t259a_c261t_c263t_c265t_t266g_a268c_c276t_t281c_c285-_g286-_c288a_g289a_g291t_g297a_g298a_c299a_g301t_a308c_c309t_g313-_c314-_a320g RHESUS IGH MUSA RHESUS-VA2FN42GH