AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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RSS TROUT-RNK5HD

SpeciesTROUT
TypeV-RS · complete signal, 3' of V (39 nt)
Sources IMGT
CACAGTA HEPTAMER 7 nt AGAGAGAGTGGTGGGAGAGCTGT spacer · 23 nt GCAAAAACC NONAMER 9 nt
Heptamer Spacer (23 nt) Nonamer

RSS spacer length determines pairing under the 12/23 rule, so it follows the locus rather than the segment: a 12 nt RSS recombines with a 23 nt RSS.

39 nt
CACAGTAAGAGAGAGTGGTGGGAGAGCTGTGCAAAAACC

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Alleles with this RSS variant

3 coding allele(s) linked to this exact RSS. The Source column shows which source recorded each allele–RSS pairing. Source coverage of allele to RSS pairings is source-specific.

Allele nameSpeciesLocus Source of this allele–RSS linkServer UID
IGHV1D-35*01 TROUT IGH IMGT TROUT-VNLHIZZ6H
IGHV1D-67*01 TROUT IGH IMGT TROUT-VLNRIJVNH
IGHV1D-70*01 TROUT IGH IMGT TROUT-V7JE4DDKO