AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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RSS ZEBRAFISH-RAFZQS

SpeciesZEBRAFISH
TypeV-RS · complete signal, 3' of V (39 nt)
Sources IMGT
CACAGTG HEPTAMER 7 nt ACTCAAACACACTCAACACTCAC spacer · 23 nt ACAAAAACA NONAMER 9 nt
Heptamer Spacer (23 nt) Nonamer

RSS spacer length determines pairing under the 12/23 rule, so it follows the locus rather than the segment: a 12 nt RSS recombines with a 23 nt RSS.

39 nt
CACAGTGACTCAAACACACTCAACACTCACACAAAAACA

Find similar RSS

Alleles with this RSS variant

9 coding allele(s) linked to this exact RSS. The Source column shows which source recorded each allele–RSS pairing. Source coverage of allele to RSS pairings is source-specific.

Allele nameSpeciesLocus Source of this allele–RSS linkServer UID
TRAV11-3*01 ZEBRAFISH TRA IMGT ZEBRAFISH-VP6COKC6Q
TRAV11-4*01 ZEBRAFISH TRA IMGT ZEBRAFISH-VLFHJBLMW
TRAV11-5*01 ZEBRAFISH TRA IMGT ZEBRAFISH-VKBEUUSGF
TRAV11-6*01 ZEBRAFISH TRA IMGT ZEBRAFISH-VNNGEBHXV
TRAV11-6*02 ZEBRAFISH TRA IMGT ZEBRAFISH-VLGDL5W23
TRAV23-1*02 ZEBRAFISH TRA IMGT ZEBRAFISH-VF3VQXRZH
TRAV24-1*01 ZEBRAFISH TRA IMGT ZEBRAFISH-VVQ4CWC4S
TRAV24-2*02 ZEBRAFISH TRA IMGT ZEBRAFISH-VF4YN5NPZ
TRAV33-1*02 ZEBRAFISH TRA IMGT ZEBRAFISH-VD5SK3TRE