AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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CAT-VDY3XXKOD

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesFelis catus LocusTRA TypeV FunctionalTrue Length284 nt

TRAV8-7*01: a Felis catus TRA V allele sequence, 284 nt, functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.

SpeciesFelis catus (NCBITAXON:9685)
Locus / typeTRA / V
Functional iTrue
Length284 nt
Protein UID iCAT-VP-AXO7AB (shared by alleles with the same V-REGION amino-acid sequence)

Coding sequence (nt)

284 nt
GCCCAGTCAGTGACTCAGCCTGATGCCCAGGTGTTGGTCTCTGAAGGAGCCCGTCTGGAGCTGAAGTGCAACTACTCCTCTAGTGGAACGACTTATGTCTTCTGGTACGTGCAGTACCCCAACCAAGGACTCCAGCTTCTCCTCAAGTACATATCAGGGGACACCCTGGTTAAAGGCCTCAACGGTTTCGAGGCTGAATTTAAGAAGAGTGAAACCTCTTTCCACCTGAGGAAATCCCCAGCCCTTGGCAGCGACGCGGCCGAGTACTTCTGTGCTGTGAGTGA

Amino-acid sequence (V-REGION)

94 aa
AQSVTQPDAQVLVSEGARLELKCNYSSSGTTYVFWYVQYPNQGLQLLLKYISGDTLVKGLNGFEAEFKKSETSFHLRKSPALGSDAAEYFCAVS

Published by the source, and consistent with the nucleotide sequence above. i

Name history i: stable — no former names, re-cuts, or archival on record.

Allele names i

Every name below denotes this exact sequence (CAT-VDY3XXKOD). None is canonical; they are labels, and the UID is the key.

NameSchemeSource(s)
TRAV8-7*01 IMGT IMGT

External records i

IMGT: TRAV8-7*01

Literature references 1 total · 1 name-mentioned* i

PubMed publications linked to this allele. Name-mentioned entries were auto-collected by name match and may refer to a different same-named allele; treat them as leads, not ground truth.

PMIDTitleEvidenceSource
38336680 NY-ESO-1-specific T cell receptor-engineered T cells and Tranilast, a TRPV2 antagonist bivalent treatment enhances the killing of esophageal cancer: a dual-targeted cancer therapeutic route. name mentioned* literature_supp

* matched by allele name only. The publication mentions this name, but AIRBabel cannot determine from the name alone whether it refers to this allele; the same name can denote a different allele in another species. This is useful for literature review but is not verified evidence.

Contributed by IMGT. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

PartSequenceSourceRSS UID
v_rsCACGGTGCCTGGGACTGCAGGGGGACCTGAACACAAACT IMGT CAT-RJPQGD

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)SplitSourceLeader UID
ATGTGCTCAGTGACCATCCTGCTGTTTGGAATGCTCTTCACAGTGAGAGGAACGGGA 46 + 11 nt IMGT CAT-LB7JRX

Find similar (nt · aa · cross-species) i

Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/CAT-VDY3XXKOD/similar?min_identity=0.95&kind=nt.