CAT-VE2PSE7DR
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
TRAV11*01: a Felis catus TRA V allele sequence, 178 nt, not recorded. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Felis catus (NCBITAXON:9685) |
|---|---|
| Locus / type | TRA / V |
| Functional i | None |
| Length | 178 nt |
| Protein UID i | CAT-VP-CM7LYW (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Translated here from the nucleotide sequence; no source published a protein for this allele. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (CAT-VE2PSE7DR). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| TRAV11*01 | IMGT | IMGT |
External records i
IMGT: TRAV11*01
Literature references i
PubMed publications linked to this allele. Name-mentioned entries were auto-collected by name match and may refer to a different same-named allele; treat them as leads, not ground truth.
| PMID | Title | Evidence | Source |
|---|---|---|---|
| 27460926 | Single-cell TCRseq: paired recovery of entire T-cell alpha and beta chain transcripts in T-cell receptors from single-cell RNAseq. | name mentioned* | literature_supp |
| 32868763 | Single-cell RNA sequencing identifies shared differentiation paths of mouse thymic innate T cells. | name mentioned* | literature_supp |
| 38658646 | De novo identification of CD4+ T cell epitopes. | name mentioned* | literature_supp |
| 38762584 | Invariant γδTCR natural killer-like effector T cells in the naked mole-rat. | name mentioned* | literature_supp |
* matched by allele name only. The publication mentions this name, but AIRBabel cannot determine from the name alone whether it refers to this allele; the same name can denote a different allele in another species. This is useful for literature review but is not verified evidence.
Contributed by IMGT. See Sources & citations for each source's version, citation and licence.
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGGAGAAGTCTGTGAGATTTTCCTTTGTCATTTTCTTCTGGCAGCTGCACTATGAAGTTGAACAGC | 56 + 11 nt | IMGT | CAT-LHYTK5 |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/CAT-VE2PSE7DR/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases