AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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CAT-VWKFUODCR

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesFelis catus LocusIGH TypeV FunctionalNone Length296 nt

IGHV3-34*01: a Felis catus IGH V allele sequence, 296 nt, not recorded. The nucleotide and amino-acid sequence is below, with every recorded name and its source.

SpeciesFelis catus (NCBITAXON:9685)
Locus / typeIGH / V
Functional iNone
Length296 nt
Protein UID iCAT-VP-5NI55H (shared by alleles with the same V-REGION amino-acid sequence)

Coding sequence (nt)

296 nt
GACGTGCAGCTGGTGCAGTCTGGGGGAGACCTGGTGAAGCCTGGGGGGTCCCTGAGACTCACCTGTGTGGCCTCTGGATTCACCTTCAGTAGCTATGGAATGAGCTGGGTCTGCCAGGCTCCAGGGAAGGGGCTGCAGTGGGTCGCATACATTTATGATGATGGAAGTGGCACATACTACGCAGACTCCGTGAAGGGCCGACTCACCATCTCCAGAGACAACTCCAAGAACACACTATATCTGCAGATGAATAGCCTGAAGACCGAGGACACGGCCACATATTACTGTGCAAGAGA

Amino-acid sequence (V-REGION)

98 aa
DVQLVQSGGDLVKPGGSLRLTCVASGFTFSSYGMSWVCQAPGKGLQWVAYIYDDGSGTYYADSVKGRLTISRDNSKNTLYLQMNSLKTEDTATYYCAR

Published by the source, and consistent with the nucleotide sequence above. i

Name history i: stable — no former names, re-cuts, or archival on record.

Allele names i

Every name below denotes this exact sequence (CAT-VWKFUODCR). None is canonical; they are labels, and the UID is the key.

NameSchemeSource(s)
IGHV3-34*01 IMGT IMGT

External records i

IMGT: IGHV3-34*01

Contributed by IMGT. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

PartSequenceSourceRSS UID
v_rsCATGGTGAGGGGACCTCACTTGGAGCCAACACACAAACC IMGT CAT-RZEDFV

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)SplitSourceLeader UID
ATGGAGTTTGTGCTTGGCTGGGTTTTCCTTGTTGCTCTTTTAAAAGGTGTCCAGTGT 46 + 11 nt IMGT CAT-LWT6B4

Find similar (nt · aa · cross-species) i

Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/CAT-VWKFUODCR/similar?min_identity=0.95&kind=nt.