COW-VHPGOP6Y7
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
TRAV38-1*02: a Bos taurus TRA V allele sequence, 289 nt, functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Bos taurus (NCBITAXON:9913) |
|---|---|
| Locus / type | TRA / V |
| Functional i | True |
| Length | 289 nt |
| Protein UID i | COW-VP-6ZXNY2 (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Published by the source, and consistent with the nucleotide sequence above. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (COW-VHPGOP6Y7). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| TRAV38-1*02 | IMGT | IMGT |
External records i
IMGT: TRAV38-1*02
Literature references i
PubMed publications linked to this allele. Name-mentioned entries were auto-collected by name match and may refer to a different same-named allele; treat them as leads, not ground truth.
| PMID | Title | Evidence | Source |
|---|---|---|---|
| 22792299 | Unbiased analysis of TCRα/β chains at the single-cell level in human CD8+ T-cell subsets. | name mentioned* | literature_supp |
* matched by allele name only. The publication mentions this name, but AIRBabel cannot determine from the name alone whether it refers to this allele; the same name can denote a different allele in another species. This is useful for literature review but is not verified evidence.
Contributed by IMGT. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | CACAGTGAGATGAGCAATGGAGAGAGGCCTACAGAAACC | IMGT | COW-RLAYFC |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGGCACTTGTTAGCTTGCTGTGGACAGTCCTGTTCTCCATGTGTCTGGGACCCAGTGTA | 49 + 11 nt | IMGT | COW-LHPYJG |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/COW-VHPGOP6Y7/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases