AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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COW-VUQI5L4GF

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesBos taurus LocusTRA TypeV FunctionalNone Length244 nt

TRAV24-6*02: a Bos taurus TRA V allele sequence, 244 nt, not recorded. The nucleotide and amino-acid sequence is below, with every recorded name and its source.

SpeciesBos taurus (NCBITAXON:9913)
Locus / typeTRA / V
Functional iNone
Length244 nt
Protein UID iCOW-VP-4M2DJM (shared by alleles with the same V-REGION amino-acid sequence)

Coding sequence (nt)

244 nt
TGGTGTCAGGAAGGAGAAAGCCCCAATTTCACCTGAAGTTTCCCTTCCAGCTCTTTCTATGCTTTACGTTGGTATAGATGGAAACCTACAAAAAGCCCCAAGAACCTGTTTGTGATGAGTGTAAATGGGGATGAAAAGAAGCAAGGATGAGTGAGAGTCACTCTGAATACTAAGGAGGGCTACAGCTCCATGTACATCAGAGGATCCCAGCCTGAAGACTCAGCCACCTACCTCTGTGCCTCCA

Amino-acid sequence (V-REGION)

81 aa
WCQEGESPNFT*SFPSSSFYALRWYRWKPTKSPKNLFVMSVNGDEKKQG*VRVTLNTKEGYSSMYIRGSQPEDSATYLCAS

Published by the source, and consistent with the nucleotide sequence above. i

Name history i: stable — no former names, re-cuts, or archival on record.

Allele names i

Every name below denotes this exact sequence (COW-VUQI5L4GF). None is canonical; they are labels, and the UID is the key.

NameSchemeSource(s)
TRAV24-6*02 IMGT IMGT

External records i

IMGT: TRAV24-6*02

Contributed by IMGT. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

PartSequenceSourceRSS UID
v_rsCACAGTGTCCCTCAGCCCCCTGCAGCTCATACCCAAAGC IMGT COW-RARSGB

Find similar (nt · aa · cross-species) i

Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/COW-VUQI5L4GF/similar?min_identity=0.95&kind=nt.