AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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COW-VVKAVNH6P

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesBos taurus LocusTRA TypeV FunctionalNone Length276 nt

TRAV44-14*02: a Bos taurus TRA V allele sequence, 276 nt, not recorded. The nucleotide and amino-acid sequence is below, with every recorded name and its source.

SpeciesBos taurus (NCBITAXON:9913)
Locus / typeTRA / V
Functional iNone
Length276 nt
Protein UID iCOW-VP-KDFWF5 (shared by alleles with the same V-REGION amino-acid sequence)

Coding sequence (nt)

276 nt
GATGCTAAGACCACCCAGCCCAGCTCCATGGATTGTGCTGAAGGAGAAGATGTAAATCTGCCTTGTAATAACTATACCATTGGTGGAAATGACTATATACATTGGTTCAGCAAAATACCAATCAGAGTCCACAGTACGTCATTCATGGCTTATGAAGCACCGTGAACAGCAGCATGGCCTCTCTGAACACAGCTTCCGACAGAAAGTGCAGCACCTTGGTCCTGCCCCAGGTCACCCTGAGAGACAACGTTGTGTACTACTGCGTCCTGAGAGAGG

Amino-acid sequence (V-REGION)

92 aa
DAKTTQPSSMDCAEGEDVNLPCNNYTIGGNDYIHWFSKIPIRVHSTSFMAYEAP*TAAWPL*TQLPTESAAPWSCPRSP*ETTLCTTAS*ER

Translated here from the nucleotide sequence; no source published a protein for this allele. i

Name history i: stable — no former names, re-cuts, or archival on record.

Allele names i

Every name below denotes this exact sequence (COW-VVKAVNH6P). None is canonical; they are labels, and the UID is the key.

NameSchemeSource(s)
TRAV44-14*02 IMGT IMGT

External records i

IMGT: TRAV44-14*02

Contributed by IMGT. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

PartSequenceSourceRSS UID
v_rsCACACTGGGACAGACGGGGCTGCACCTGTGCAGTGTTTC IMGT COW-RLZDJM

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)SplitSourceLeader UID
ATGAGGCTGGTGACTGGAGTAACTGTGTTTCTGACCTTGGGGACTGTGATT 40 + 11 nt IMGT COW-L6PXGZ

Find similar (nt · aa · cross-species) i

Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/COW-VVKAVNH6P/similar?min_identity=0.95&kind=nt.