AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

← back to search

GRASSCARP-CH25I4S3O

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesCtenopharyngodon idella LocusIGH TypeC FunctionalNone Length652 nt

IGHT1*01: a Ctenopharyngodon idella IGH C allele sequence, 652 nt, not recorded. The nucleotide sequence is below, with every recorded name and its source.

SpeciesCtenopharyngodon idella (NCBITAXON:7959)
Locus / typeIGH / C
Functional iNone
Length652 nt

Coding sequence (nt)

IMGT publishes this constant region as separate domain records, not as one sequence. What is shown here is those domains concatenated in domain order: CH1:299 + CH4:353, which is the secreted form. The membrane-bound form uses different 3' exons and is a separate transcript, not represented here.

652 nt c_secreted
CTGAACCATCTGCGCCGAAGTCAATCTTCGCCCTGTCTCAGTGTTCTTCTGATTCTGAGTTCCTCACCATCGGCTGCGTGTCAAGAGGTTTCTCCCCTGCAGACTCGCTTACTTTCAAATGGAAGGATCCCGCTGATAAAGAGCTGACTGATTTCGTGGAGTATCCAGCGTTTGGGAGTGACGGAGACTATACCAAAATCAGCCATCTGCGTGTGAAAAAAAGCGACTGGAATCCTCAAAAACCTTACACATGTGAAGCTTCAAATTCGAATGGCAAAAAAGAAACTAAAGCGCCAACAATGAAAAGAAACTCAATCTTACCATTTACAGACCAGATATTATCAACAAAGACAGTGTCTCTCTGGTGTGTGAGGTCACATGCCCTAAACCTCGTGCTGTCTATATCATGTGGAAGGTGGGCAATGAACCTTACATTGAGGGCAGAACCAGTGCTTCCATCCCTCAAGAGAACTCCACGTCTGTTTTCAGCATCCTAACAATCACAAAGGAAACATATGAAAAACCCCAAACCACCATCACCTGCGCAGTCAAACACGCCAACATGAAGAATACAAGCGCTCCATTACAAGTGTCAACAAGCCAAAGTAAACAATGTCCAGAATGTCCAGTTTGTAACAAAGATTATGCATGC

Name history i: stable — no former names, re-cuts, or archival on record.

Allele names i

Every name below denotes this exact sequence (GRASSCARP-CH25I4S3O). None is canonical; they are labels, and the UID is the key.

NameSchemeSource(s)
IGHT1*01 IMGT IMGT

External records i

IMGT: IGHT1*01

Contributed by IMGT. See Sources & citations for each source's version, citation and licence.

Find similar (nt · aa · cross-species) i

Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/GRASSCARP-CH25I4S3O/similar?min_identity=0.95&kind=nt.