HORSE-JN5OCN2HT
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
a Equus caballus IGH J allele sequence, 58 nt, not recorded, archived. The nucleotide sequence is below, with every recorded name and its source.
A newer source record exists for this allele designation. IGHJ1*01 is still published by IMGT as HORSE-JBM5MRE2P, 54 nt, a shorter cut contained in this sequence. This is the earlier record (58 nt, current in IMGT releases 2020-01-31). The allele was not renamed and it was not withdrawn: IMGT changed the published sequence extent associated with this designation. Both extents are kept because a sequence is identified by its bases, so a change in extent is a different sequence.
| Species | Equus caballus (NCBITAXON:9796) |
|---|---|
| Locus / type | IGH / J |
| Functional i | None |
| Length | 58 nt |
Coding sequence (nt)
Name history i: first seen IMGT 2020-01-31; formerly IGHJ1*01 (to 2020-01-31); superseded by IGHJ1*01 (54 nt); archived — removed from the current IMGT reference, kept reachable;
Allele names i
None.
Former IMGT names i
| Former name | Last seen in IMGT release |
|---|---|
| IGHJ1*01 | 2020-01-31 |
Contributed by IMGT. See Sources & citations for each source's version, citation and licence.
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/HORSE-JN5OCN2HT/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases