HORSE-VGCER6BQT

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesEquus caballus LocusIGH TypeV FunctionalNone Length302 nt

IGHV3-40*02: a Equus caballus IGH V allele sequence, 302 nt, not recorded. The nucleotide and amino-acid sequence is below, with every recorded name and its source.

Species	Equus caballus (NCBITAXON:9796)
Locus / type	IGH / V
Functional i	None
Length	302 nt
Protein UID i	HORSE-VP-GXV73R (shared by alleles with the same V-REGION amino-acid sequence)

Coding sequence (nt)

302 nt

GAAGTTAAGCTGGTGGAGTCAGGGGAGATGTGTGACAGAACAGGATTATTTCAGAGATTCTCCTAAAGACCCTCTGGATTCACCTTCACTGACTACCGTATGCACTGCATCCACCATGGTCCAGGGCAGGGGCTAAGTGGGTGACAGGAGAGAGGGAACAAACTGGAAAGAATCAGTGTTATGCTCCACCAGTTCAAGGAAGGTTCACACACTATAGAGACAGCCGTAGGAGCACAGTCTCTCTCAACATGACCAACCTGAAATCTGAGGACAGACAAGACCAAGTACTACCGTGCAAGAGA

Amino-acid sequence (V-REGION)

100 aa

EVKLVESGEMCDRTGLFQRFS*RPSGFTFTDYRMHCIHHGPGQGLSG*QERGNKLERISVMLHQFKEGSHTIETAVGAQSLST*PT*NLRTDKTKYYRAR

Translated here from the nucleotide sequence; no source published a protein for this allele. i

Name history i: stable — no former names, re-cuts, or archival on record.

Allele names i

Every name below denotes this exact sequence (HORSE-VGCER6BQT). None is canonical; they are labels, and the UID is the key.

Name	Scheme	Source(s)
IGHV3-40*02	IMGT	IMGT

External records i

IMGT: IGHV3-40*02

Contributed by IMGT. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	CACAGGAGAGGAAGTCAGTGTAAGCCCAAACACAAACCA	IMGT	HORSE-RHQJGG

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGGGGTCTGTGCTCATCTGGGATTCCCTTCTCATCACTGTCAGAGAGGTGTTGTGT	46 + 11 nt	IMGT	HORSE-L55RTI

Find similar (nt · aa · cross-species) i

Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/HORSE-VGCER6BQT/similar?min_identity=0.95&kind=nt.

API: JSON · AIRR AlleleDescription · aliases