AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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HUMAN-VAEMHEBEV

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesHomo sapiens LocusIGL TypeV FunctionalFalse Length298 nt

IGLV2-5*03: a Homo sapiens IGL V allele sequence, 298 nt, non-functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.

SpeciesHomo sapiens (NCBITAXON:9606)
Locus / typeIGL / V
Functional iFalse
Length298 nt
Protein UID iHUMAN-VP-PG55NJ (shared by alleles with the same V-REGION amino-acid sequence)

Coding sequence (nt)

298 nt
CAGTCTGCCCTGATTCAGCCTCCCTCCGTGTCCGGGTCTCCTGGACAGTCAGTCACCATCTCCTGCACTGGAACCAGCAGTGATGTTGGGAGTTATGACTATGTCTCCTGGTACCAACAGCACCCAGGCACAGTCCCCAAACCCATGATCTACAATGTCAATACTCGGCCCTCAGGGGTCCCTGATCGTTTCTCTGGCTCCAAGTCTGGCAATACGGCCTCCATGACCATCTCTGGACTCCAGGCTGAGGACGAGGCTGATTATTAGTGCTGCTCATATACAAGCAGTGCCACTTAAC

Amino-acid sequence (V-REGION)

99 aa
QSALIQPPSVSGSPGQSVTISCTGTSSDVGSYDYVSWYQQHPGTVPKPMIYNVNTRPSGVPDRFSGSKSGNTASMTISGLQAEDEADY*CCSYTSSAT*

Published by the source, and consistent with the nucleotide sequence above. i

Name history i: stable — no former names, re-cuts, or archival on record.

Allele names i

Every name below denotes this exact sequence (HUMAN-VAEMHEBEV). None is canonical; they are labels, and the UID is the key.

NameSchemeSource(s)
IGLV2-5*03 IMGT IMGT

Other names & identifiers

Alternative and former names, e.g. IMGT clone names, plus accession identifiers.

NameKindSource(s)
BK075720.1 NCBI accession ncbi_nucleotide

External records i

NCBI nucleotide: link GenBank: GENBANK:BK075720 GenBank: GENBANK:BK075720.1 IMGT: IGLV2-5*03

Contributed by IMGT, ncbi_nucleotide. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

PartSequenceSourceRSS UID
v_rsCACAGTGGTCCAAGTTCTTGGGGAACTGAGACGAAAACC IMGT HUMAN-RLUGGZ

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)SplitSourceLeader UID
ATGGCCTGGGCTCTGCTCCTCCTCACCTCCTCACTCAGGGCACAGGCTCTTGGGCC 45 + 11 nt IMGT HUMAN-L5C5QB

Find similar (nt · aa · cross-species) i

Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/HUMAN-VAEMHEBEV/similar?min_identity=0.95&kind=nt.