AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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HUMAN-VOFOYVJSY

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesHomo sapiens LocusIGK TypeV FunctionalFalse Length287 nt

IGKV1/OR10-1*01: a Homo sapiens IGK V allele sequence, 287 nt, non-functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.

SpeciesHomo sapiens (NCBITAXON:9606)
Locus / typeIGK / V
Functional iFalse
Length287 nt
Protein UID iHUMAN-VP-JA5KJU (shared by alleles with the same V-REGION amino-acid sequence)

Coding sequence (nt)

287 nt
GACATCCAGATGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAGTCACCATCACTTGCCGGGCGAGTCAGGGCATTAGCAATAATTTAAATTGGTATCAGCAGAAACCAGGGAAAACTCCTAAGCTCCTGATCTATGCTGCATCCAGTCTGCAAAGTGGGATTCCCTCTCGGTTCAGTGACAGTGGATCTGGGACAGATTACACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAACTTATTACTGTCAACAGAGTGACAGTACCTCTCC

Amino-acid sequence (V-REGION)

95 aa
DIQMTQSPSSLSASVGDRVTITCRASQGISNNLNWYQQKPGKTPKLLIYAASSLQSGIPSRFSDSGSGTDYTLTISSLQPEDFATYYCQQSDSTS

Published by the source, and consistent with the nucleotide sequence above. i

Name history i: stable — no former names, re-cuts, or archival on record.

Allele names i

Every name below denotes this exact sequence (HUMAN-VOFOYVJSY). None is canonical; they are labels, and the UID is the key.

NameSchemeSource(s)
IGKV1/OR10-1*01 IMGT IMGT

Other names & identifiers

Alternative and former names, e.g. IMGT clone names, plus accession identifiers.

NameKindSource(s)
AL031601.4 NCBI accession ncbi_nucleotide

External records i

NCBI nucleotide: link GenBank: GENBANK:AL031601 GenBank: GENBANK:AL031601.4 IMGT: IGKV1/OR10-1*01

Contributed by IMGT, ncbi_nucleotide. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

PartSequenceSourceRSS UID
v_rsCACAGTGTTACAAGTCATAACATAAACC IMGT HUMAN-R3FB2W

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)SplitSourceLeader UID
GTGAGGGCCCCCACTCAGCTCCTGGGGCTCCTGGTGCTCTGGCTGCCAGGTGCCAGATGT 49 + 11 nt IMGT HUMAN-L3BMAG

Find similar (nt · aa · cross-species) i

Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/HUMAN-VOFOYVJSY/similar?min_identity=0.95&kind=nt.