AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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HUMAN-VWGVHL57S

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesHomo sapiens LocusIGL TypeV FunctionalFalse Length312 nt

IGLV11-55*02: a Homo sapiens IGL V allele sequence, 312 nt, non-functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.

SpeciesHomo sapiens (NCBITAXON:9606)
Locus / typeIGL / V
Functional iFalse
Length312 nt
Protein UID iHUMAN-VP-SS4DQK (shared by alleles with the same V-REGION amino-acid sequence)

Coding sequence (nt)

312 nt
CGGCCCGTGCTGACTCAGCCGCCCTCCCTGTCTGCATCCCCGGGAGCAACAGCCAGACTCCCCTGCACCCTGAGCAGTGACCTCAGTGTTGGTGGTAAAAACATGTTCTGGTACCAGCAGAAGCTAGGGAGCTCTCCCAGGTTATTCCTGTATCACTACTCAGACTCAGACAAGCAGCTGGGACCTGGGGTCCCCAGTCGAGTCTCTGGCTCCAAGGAGACCTCAAGTAACACAGCGTTTTTGCTCATCTCTGGGCTCCAGCCTGAGGACGAGGCCGATTATTACTGCCAGGTGTACGAAAGTAGTGCTAAT

Amino-acid sequence (V-REGION)

104 aa
RPVLTQPPSLSASPGATARLPCTLSSDLSVGGKNMFWYQQKLGSSPRLFLYHYSDSDKQLGPGVPSRVSGSKETSSNTAFLLISGLQPEDEADYYCQVYESSAN

Published by the source, and consistent with the nucleotide sequence above. i

Name history i: stable — no former names, re-cuts, or archival on record.

Allele names i

Every name below denotes this exact sequence (HUMAN-VWGVHL57S). None is canonical; they are labels, and the UID is the key.

NameSchemeSource(s)
IGLV11-55*02 IMGT IMGT, OGRDB

Other names & identifiers

Alternative and former names, e.g. IMGT clone names, plus accession identifiers.

NameKindSource(s)
KM455555.1 NCBI accession ncbi_nucleotide

External records i

NCBI nucleotide: link GenBank: GENBANK:KM455555 GenBank: GENBANK:KM455555.1 IMGT: IGLV11-55*02 OGRDB: IGLV11-55*02

Literature references 1 total · 1 verified i

PubMed publications linked to this allele.

PMIDTitleEvidenceSource
25338678 Sequencing of the human IG light chain loci from a hydatidiform mole BAC library reveals locus-specific signatures of genetic diversity. verified ncbi_nucleotide

Contributed by IMGT, OGRDB, ncbi_nucleotide. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

PartSequenceSourceRSS UID
v_rsCACAGTGAGACAGATGAGGAAGTCGGACAAAAACC IMGT HUMAN-R6EQVL

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)SplitSourceLeader UID
ATGGCCCTGACTCCTCTCCTCCTCCTGCTCCTCTCTCACTGCACAGGTTCCCTCTCC 46 + 11 nt IMGT HUMAN-LWSH75

Find similar (nt · aa · cross-species) i

Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/HUMAN-VWGVHL57S/similar?min_identity=0.95&kind=nt.