AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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LEMUR-VDO4FLZRL

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesLemur catta LocusIGL TypeV FunctionalTrue Length308 nt

IGLV4-94*01: a Lemur catta IGL V allele sequence, 308 nt, functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.

SpeciesLemur catta (NCBITAXON:9447)
Locus / typeIGL / V
Functional iTrue
Length308 nt
Protein UID iLEMUR-VP-X2NAOA (shared by alleles with the same V-REGION amino-acid sequence)

Coding sequence (nt)

308 nt
CAGCCTGTGCTGACTCAGTCGCCCTCTGCGTCTGCCTCCCTGGGAGCCAAGCTCACCTGCACCCTGAGCAGTGGATACAGCAACTATGGCATTGCGTGGCATCAGCAGCAGCCGGGGAAGGCCCCTCGGTACTTGATGTGGCTTAAGAGTGATGGAAGCCACAGCAAGGGGGACGGGATCCCTGATCGCTTCTCGGGCTCCAGCTCCGGGGCTGACCGCTACTTAACCATCTCCAGCATCCAGTCTGAGGACGAGGCTGACTATTACTGTGGTGCAGGTTATGGCAGTGGTGGTTCATATCGTTGAAG

Amino-acid sequence (V-REGION)

102 aa
QPVLTQSPSASASLGAKLTCTLSSGYSNYGIAWHQQQPGKAPRYLMWLKSDGSHSKGDGIPDRFSGSSSGADRYLTISSIQSEDEADYYCGAGYGSGGSYR*

Published by the source, and consistent with the nucleotide sequence above. i

Name history i: stable — no former names, re-cuts, or archival on record.

Allele names i

Every name below denotes this exact sequence (LEMUR-VDO4FLZRL). None is canonical; they are labels, and the UID is the key.

NameSchemeSource(s)
IGLV4-94*01 IMGT IMGT

External records i

IMGT: IGLV4-94*01

Contributed by IMGT. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

PartSequenceSourceRSS UID
v_rsCACAGTGATCCAGATGAATGGGGAAGTGGGACAAAAACT IMGT LEMUR-RZPIEK

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)SplitSourceLeader UID
ATGGCCTGGGCCCCCCTCCTCCTCCTCACCCTCCTCCTCCACTGCACAGGGTCCCTCTCC 49 + 11 nt IMGT LEMUR-LCAY2W

Find similar (nt · aa · cross-species) i

Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/LEMUR-VDO4FLZRL/similar?min_identity=0.95&kind=nt.