AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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MOUSE-JGQDFRXFD

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

StatusArchived · seen 2013-01-20 SpeciesMus musculus LocusTRA TypeJ FunctionalNone Length54 nt RecordSuperseded

a Mus musculus TRA J allele sequence, 54 nt, not recorded, archived. The nucleotide sequence is below, with every recorded name and its source.

A newer source record exists for this allele designation. TRAJ21*02 is still published by IMGT as MOUSE-JBJJMBVRB, 55 nt, which contains this sequence. This is the earlier record (54 nt, current in IMGT releases 2013-01-20). The allele was not renamed and it was not withdrawn: IMGT changed the published sequence extent associated with this designation. Both extents are kept because a sequence is identified by its bases, so a change in extent is a different sequence.

SpeciesMus musculus (NCBITAXON:10090)
Locus / typeTRA / J
Functional iNone
Length54 nt

Coding sequence (nt)

54 nt
TCTAATTACAACGTGCTTTACTTCGGATCTGGCTCCAAACTCACTGTAGAGCCA

Name history i: first seen IMGT 2013-01-20; formerly TRAJ21*02 (to 2013-01-20); superseded by TRAJ21*02 (55 nt); archived — removed from the current IMGT reference, kept reachable;

Allele names i

None.

Former IMGT names i

Former nameLast seen in IMGT release
TRAJ21*022013-01-20

Contributed by IMGT. See Sources & citations for each source's version, citation and licence.

Find similar (nt · aa · cross-species) i

Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/MOUSE-JGQDFRXFD/similar?min_identity=0.95&kind=nt.