AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

← back to search

MOUSE-VCXPDEB7T

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

StatusArchived · seen 2013-01-20 → 2015-03-19 SpeciesMus musculus LocusTRA TypeV FunctionalNone Length272 nt RecordSuperseded

a Mus musculus TRA V allele sequence, 272 nt, not recorded, archived. The nucleotide and amino-acid sequence is below, with every recorded name and its source.

A newer source record exists for this allele designation. TRAV7D-2*02 is still published by IMGT as MOUSE-V7GR2VQDJ, 277 nt, which contains this sequence. This is the earlier record (272 nt, current in IMGT releases 2013-01-20–2015-03-19). The allele was not renamed and it was not withdrawn: IMGT changed the published sequence extent associated with this designation. Both extents are kept because a sequence is identified by its bases, so a change in extent is a different sequence.

SpeciesMus musculus (NCBITAXON:10090)
Locus / typeTRA / V
Functional iNone
Length272 nt
Protein UID iMOUSE-VP-ZNC2NG (shared by alleles with the same V-REGION amino-acid sequence)

Coding sequence (nt)

272 nt
CAACAGAAGGTGCAGCAGAGCCCAGAATCCCTCATTGTTCCAGAGGGAGGCATGGCCTCTCTCAACTGCACTTCCAGTGATCGTAATGTTGACTACTTCTGGTGGTACAGACAGCACTCTGGGAAAAGCCCCAAGATGCTGATGTCTATCTTCTCCAATGGTGAAAAGGAAGAAGGCAGATTCACAGTTCACCTCAATAAAGCCAGCCTGCATACTTCCCTGCACATCAGAGACTCCCAGCCCAGTGACTCTGCTCTCTACCTCTGTGCAGC

Amino-acid sequence (V-REGION)

90 aa
QQKVQQSPESLIVPEGGMASLNCTSSDRNVDYFWWYRQHSGKSPKMLMSIFSNGEKEEGRFTVHLNKASLHTSLHIRDSQPSDSALYLCA

Translated here from the nucleotide sequence; no source published a protein for this allele. i

Name history i: first seen IMGT 2013-01-20; formerly TRAV7D-2*02 (to 2013-01-20); superseded by TRAV7D-2*02 (277 nt); archived — removed from the current IMGT reference, kept reachable;

Allele names i

None.

Former IMGT names i

Former nameLast seen in IMGT release
TRAV7D-2*022013-01-20

Contributed by IMGT. See Sources & citations for each source's version, citation and licence.

Find similar (nt · aa · cross-species) i

Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/MOUSE-VCXPDEB7T/similar?min_identity=0.95&kind=nt.