MOUSE-VHQDXZ3YG

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMus musculus LocusIGK TypeV FunctionalTrue Length287 nt

IGKV5-37*01: a Mus musculus IGK V allele sequence, 287 nt, functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.

Species	Mus musculus (NCBITAXON:10090)
Locus / type	IGK / V
Functional i	True
Length	287 nt
Protein UID i	MOUSE-VP-SMTWF6 (shared by alleles with the same V-REGION amino-acid sequence)

Coding sequence (nt)

287 nt

GACATCCTGCTGACCCAGTCTCCAGCCACCCTGTCTGTGACTCCAGGAGAAACAGTCAGTCTTTCCTGTAGGGCCAGCCAGAGTATTTACAAGAACCTACACTGGTATCAACAGAAATCACATCGGTCTCCAAGGCTTCTCATCAAGTATGCTTCTGATTCCATCTCTGGGATCCCCTCCAGGTTCACTGGCAGTGGATCAGGGACAGATTACACTCTCAGTATCAACAGTGTGAAGCCCGAAGATGAAGGAATATATTACTGTCTTCAAGGTTACAGCACACCTTC

Amino-acid sequence (V-REGION)

95 aa

DILLTQSPATLSVTPGETVSLSCRASQSIYKNLHWYQQKSHRSPRLLIKYASDSISGIPSRFTGSGSGTDYTLSINSVKPEDEGIYYCLQGYSTP

Published by the source, and consistent with the nucleotide sequence above. i

Name history i: stable — no former names, re-cuts, or archival on record.

Allele names i

Every name below denotes this exact sequence (MOUSE-VHQDXZ3YG). None is canonical; they are labels, and the UID is the key.

Name	Scheme	Source(s)
IGKV0-QZQN*00	IgLabel	OGRDB
IGKV5-37*01	IMGT	IMGT

Other names & identifiers

Alternative and former names, e.g. IMGT clone names, plus accession identifiers.

Name	Kind	Source(s)
AJ235963.1	NCBI accession	ncbi_nucleotide

External records i

NCBI nucleotide: link GenBank: GENBANK:AJ235963 GenBank: GENBANK:AJ235963.1 IMGT: IGKV5-37*01 OGRDB: IGKV0-QZQN*00

Literature references 4 total · 1 verified · 3 name-mentioned* i

PubMed publications linked to this allele. Name-mentioned entries were auto-collected by name match and may refer to a different same-named allele; treat them as leads, not ground truth.

PMID	Title	Evidence	Source
10427970		verified	ncbi_nucleotide
37640732	Engaging an HIV vaccine target through the acquisition of low B cell affinity.	name mentioned^*	literature_supp
39698082	Comprehensive method for producing high-affinity mouse monoclonal antibodies of various isotypes against (4-hydroxy-3-nitrophenyl)acetyl (NP) hapten.	name mentioned^*	literature_supp
41410768	Convergent mutation trajectories convert functional self-tolerance in IGHV4-34 B cells to genetic tolerance encoded in the antibody.	name mentioned^*	literature_supp

* matched by allele name only. The publication mentions this name, but AIRBabel cannot determine from the name alone whether it refers to this allele; the same name can denote a different allele in another species. This is useful for literature review but is not verified evidence.

Contributed by IMGT, OGRDB, ncbi_nucleotide. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	CACAGTGATGCAGACCATAGCAAAAACC	IMGT	MOUSE-R76N7M

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGGTATTCACACCTCATATCCTTGGACTTCTGCTTTTCTGGATTTCAGCCTCCACAGGT	49 + 11 nt	IMGT	MOUSE-LOXTF5

Find similar (nt · aa · cross-species) i

Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/MOUSE-VHQDXZ3YG/similar?min_identity=0.95&kind=nt.

API: JSON · AIRR AlleleDescription · aliases