MOUSE-VN5LHJDXD
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
TRAV7-6*02: a Mus musculus TRA V allele sequence, 277 nt, functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
Earlier records of this allele i
IMGT has published this allele name over more than one sequence extent. Earlier sequence extents are deferred from default search results but remain resolvable, so a paper that cited one still leads here.
| Record | Name | Length | Relation to this record | IMGT releases |
|---|---|---|---|---|
| MOUSE-V5CIGI36B | TRAV7-6*02 | 276 nt | bases differ | 2013-01-20–2022-01-17 |
| Species | Mus musculus (NCBITAXON:10090) |
|---|---|
| Locus / type | TRA / V |
| Functional i | True |
| Length | 277 nt |
| Protein UID i | MOUSE-VP-X4F76P (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Published by the source, and consistent with the nucleotide sequence above. i
Name history i: re-cut from TRAV7-6*02 (276 nt);
Allele names i
Every name below denotes this exact sequence (MOUSE-VN5LHJDXD). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| TRAV7-6*02 | IMGT | IMGT |
External records i
IMGT: TRAV7-6*02
Contributed by IMGT. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | CACAGTGCTCCCCAGGCACCTGCAGCCTGCACCCAAACA | IMGT | MOUSE-RJFNWT |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGCATTCCTTACATGTTTCACTAGTGTTCCTCTGGCTTCAACTAGGTGGGGTGAGCAGC | 49 + 11 nt | IMGT | MOUSE-LDASY2 |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/MOUSE-VN5LHJDXD/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases