MOUSE-VRRA343G3

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMus musculus LocusTRA TypeV FunctionalTrue Length280 nt

TRAV14-3*05: a Mus musculus TRA V allele sequence, 280 nt, functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.

Species	Mus musculus (NCBITAXON:10090)
Locus / type	TRA / V
Functional i	True
Length	280 nt
Protein UID i	MOUSE-VP-TI3572 (shared by alleles with the same V-REGION amino-acid sequence)

Coding sequence (nt)

280 nt

CAGCAGCAGGTGAGACAAAGTCCCCAATCTCTGACAGTCTGGGAAGGAGAGACCGCAATTCTGAACTGCAGTTATGAGAACAGTGCTTTTGACTACTTCCCATGGTACCAGCAGTTCCCTGGGGAAGGTCCCGCTCTCCTGATATCCATACTTTCAGTGTCCAATAAAAAGGAAGATGGACGATTCACAATCTTCTTCAATAAAAGGGAGAAAAAGCTCTCCTTGCACATTGCAGACTCTCAGCCTGGAGACTCAGCCACCTACTTCTGTGCAGCAAGTG

Amino-acid sequence (V-REGION)

93 aa

QQQVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSNKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAS

Published by the source, and consistent with the nucleotide sequence above. i

Name history i: formerly TRAV14-3*02 (to 2013-01-20);

Allele names i

Every name below denotes this exact sequence (MOUSE-VRRA343G3). None is canonical; they are labels, and the UID is the key.

Name	Scheme	Source(s)
TRAV14-3*05	IMGT	IMGT

Former IMGT names i

Former name	Last seen in IMGT release
*TRAV14-302**	2013-01-20

External records i

IMGT: TRAV14-3*05

Contributed by IMGT. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	CACAGTGCTCTCCAGGCACCTGCAGCCCATACCCAAACC	IMGT	MOUSE-RXFYMY

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGGACAAGATCCTGACAGCATCGTTTTTACTTCTAGGCCTTCACCTAGCTGGGGTGAGTGGCCAGCAGGAGAAACGTGAC	52 + 29 nt	IMGT	MOUSE-LYZOEI

Find similar (nt · aa · cross-species) i

Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/MOUSE-VRRA343G3/similar?min_identity=0.95&kind=nt.

API: JSON · AIRR AlleleDescription · aliases