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MOUSE-VS37WI74O

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

StatusArchived · seen 2013-01-20 SpeciesMus musculus LocusTRA TypeV FunctionalNone Length284 nt RecordSuperseded

a Mus musculus TRA V allele sequence, 284 nt, not recorded, archived. The nucleotide and amino-acid sequence is below, with every recorded name and its source.

A newer source record exists for this allele designation. TRAV16*05 is still published by IMGT as MOUSE-VL66VSRKG, 276 nt, a shorter cut contained in this sequence. This is the earlier record (284 nt, current in IMGT releases 2013-01-20). The allele was not renamed and it was not withdrawn: IMGT changed the published sequence extent associated with this designation. Both extents are kept because a sequence is identified by its bases, so a change in extent is a different sequence.

SpeciesMus musculus (NCBITAXON:10090)
Locus / typeTRA / V
Functional iNone
Length284 nt
Protein UID iMOUSE-VP-ZUQUOJ (shared by alleles with the same V-REGION amino-acid sequence)

Coding sequence (nt)

284 nt
AAGGTAACACAGACTCAGACTTTAATTTCTGTGATGGAGAAGACAACGGTGACAATGGACTGTGTGTATGAAACCCGGGAAAGTTCTTACTACTTATTCTGGTACAAGCAAACAGCAAGTGGGGAAATAGTTTTCCTTATTCGTCAGGACTCTTACAAAAAGGAAAATGCAACAGTGGGTCATTATTCTCTGAACTTTCAGAAGCCAAAAAGTTCCATCGGACTCATCATCACCGCCACACAGATTGAGGACTCGGCAGTATATTTCTGTGCTATGTTAAATAA

Amino-acid sequence (V-REGION)

94 aa
KVTQTQTLISVMEKTTVTMDCVYETRESSYYLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSAVYFCAMLN

Translated here from the nucleotide sequence; no source published a protein for this allele. i

Name history i: first seen IMGT 2013-01-20; formerly TRAV16*05 (to 2013-01-20); superseded by TRAV16*05 (276 nt); archived — removed from the current IMGT reference, kept reachable;

Allele names i

None.

Former IMGT names i

Former nameLast seen in IMGT release
TRAV16*052013-01-20

Contributed by IMGT. See Sources & citations for each source's version, citation and licence.

Find similar (nt · aa · cross-species) i

Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/MOUSE-VS37WI74O/similar?min_identity=0.95&kind=nt.