MOUSE-VSQYGSJCA

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMus musculus LocusIGH TypeV FunctionalNone Length313 nt

IGHV8-4-9*01: a Mus musculus IGH V allele sequence, 313 nt, not recorded. The nucleotide and amino-acid sequence is below, with every recorded name and its source.

Species	Mus musculus (NCBITAXON:10090)
Locus / type	IGH / V
Functional i	None
Length	313 nt
Protein UID i	MOUSE-VP-F37TNL (shared by alleles with the same V-REGION amino-acid sequence)

Coding sequence (nt)

313 nt

CAAGTTACTCTGAATGAATTTGGTCATAGAAAATTGTAGCCTTCCAAGACCTTCAGTTTGACTTGCTCTTTCTCTGGGTTTTTGCTGAGCACTTCTTGAATAGACTTTAGCTAGATTTGGCAGCCATCAGGGAAGGGTCTGGAGTAGCTGGCAACAATTTGTTGATCTCAACAAATTGTTGATGATAAGTGCTAGAACCCGTTTCTGAAGAGTTGGCTCACAGTCTCCAAATACACTTCCAAGAACCAAGAATTCCTCAAGATCAGCAGCATGGACACTGCAGATACTGCCACATAGTTCTGTGCTCACATAG

Amino-acid sequence (V-REGION)

104 aa

QVTLNEFGHRKL*PSKTFSLTCSFSGFLLSTS*IDFS*IWQPSGKGLE*LATIC*SQQIVDDKC*NPFLKSWLTVSKYTSKNQEFLKISSMDTADTAT*FCAHI

Translated here from the nucleotide sequence; no source published a protein for this allele. i

Name history i: stable — no former names, re-cuts, or archival on record.

Allele names i

Every name below denotes this exact sequence (MOUSE-VSQYGSJCA). None is canonical; they are labels, and the UID is the key.

Name	Scheme	Source(s)
IGHV8-4-9*01	IMGT	IMGT

External records i

IMGT: IGHV8-4-9*01

Contributed by IMGT. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	CACTTTGATCCAGCCTCAGTTTATAGCTGTGCAATATT	IMGT	MOUSE-RJIPCL

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGGTCAGGTCTACTTCTCATTCCTGCTGATGATTGCCCCTAATACGTTCTTTTC	44 + 11 nt	IMGT	MOUSE-LOSZYI

Find similar (nt · aa · cross-species) i

Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/MOUSE-VSQYGSJCA/similar?min_identity=0.95&kind=nt.

API: JSON · AIRR AlleleDescription · aliases