MOUSE-VYAYKH4VP

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMus musculus LocusIGH TypeV FunctionalFalse Length294 nt

Species	Mus musculus (NCBITAXON:10090)
Locus / type	IGH / V
Functional i	False
Length	294 nt
Protein UID i	MOUSE-VP-ZZDLTH (shared by alleles with the same V-REGION amino-acid sequence)

Allele names i

Every name below denotes this exact sequence (MOUSE-VYAYKH4VP). None is canonical; they are labels, and the UID is the key.

Name	Scheme	Source(s)
IGHV1-47-51*01	IMGT	IMGT

Other names & identifiers

Alternative and former names, e.g. IMGT clone names, plus accession identifiers.

Name	Kind	Source(s)
BK063714.1	NCBI accession	ncbi_nucleotide

External records i

NCBI nucleotide: link GenBank: GENBANK:BK063714 GenBank: GENBANK:BK063714.1 IMGT: IGHV1-47-51*01

Literature references 1 total · 1 verified i

PubMed publications linked to this allele.

PMID	Title	Evidence	Source
34875068		verified	ncbi_nucleotide

Contributed by IMGT, ncbi_nucleotide. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	CACAGTGTTGCAACCACATCCTGAGAGTGTCAAAAATA	IMGT	MOUSE-RFEOJT

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGGGATGGAGCTCTATCATCCTCTTCTTGGTAGCAACAGCTACAGGTGTCCACTCC	46 + 11 nt	IMGT	MOUSE-LPB3LH

Find similar alleles

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/MOUSE-VYAYKH4VP/similar?min_identity=0.95&kind=nt.

Coding sequence (nt)

294 nt

CAGGTCCAACTGCAGCAGCCTGGGTCTGTGCTGGTGAGGCCTGGAGCTTCAGTGAAGCTGTCCTGCAAGGCTTCTGGCTACACATTCACCAGCTACTGGATGAACTGGGTGAAGCAGAGGCCTGGACAAGGCCTTGAGTGGATTGGAGGGATTTATCCTAATAGTGGTAGTACTGACTACAATGAGAAGTTCAAGGGCAAGGCCACACTGACTGTAGACACATCCTCCAGCACAGCCTACATGGATCTCAGCAGCCTGACATCTGAGGACTCTGCGGTCTATTACTGTGCAAGA

Amino-acid sequence (V-REGION)

98 aa

QVQLQQPGSVLVRPGASVKLSCKASGYTFTSYWMNWVKQRPGQGLEWIGGIYPNSGSTDYNEKFKGKATLTVDTSSSTAYMDLSSLTSEDSAVYYCAR

Published by the source, and consistent with the nucleotide sequence above. i

API: JSON · AIRR AlleleDescription · aliases