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MOUSE-VYY6575KU

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

StatusArchived · seen 2013-01-20 → 2015-03-19 SpeciesMus musculus LocusTRB TypeV FunctionalNone Length273 nt RecordSuperseded

a Mus musculus TRB V allele sequence, 273 nt, not recorded, archived. The nucleotide and amino-acid sequence is below, with every recorded name and its source.

A newer source record exists for this allele designation. TRBV13-2*02 is still published by IMGT as MOUSE-V5I26HBDD, 274 nt, which contains this sequence. This is the earlier record (273 nt, current in IMGT releases 2013-01-20–2015-03-19). The allele was not renamed and it was not withdrawn: IMGT changed the published sequence extent associated with this designation. Both extents are kept because a sequence is identified by its bases, so a change in extent is a different sequence.

SpeciesMus musculus (NCBITAXON:10090)
Locus / typeTRB / V
Functional iNone
Length273 nt
Protein UID iMOUSE-VP-ICSAMA (shared by alleles with the same V-REGION amino-acid sequence)

Coding sequence (nt)

273 nt
GTCACCCAAAGCCCAAGAAACAAGGTGGCAGTAACAGGAGGAAAGGTGACATTGAGCTGTAATCAGACTAATAACCACAACAACATGTACTGGTATCGGCAGGACACGGGGCATGGGCTGAGGCTGATCCATTATTCATATGGTGCTGGCAGCACTCAGAAAGCAGATATCCCTGATGGATACAAGGCCTCCAGACCAAGCCAAGAGAACTTCTCCCTCATTCTGGAGTTGGCTACCCCCTCTCAGACATCAGTGTACTTCTGTGCCAGCGGT

Amino-acid sequence (V-REGION)

91 aa
VTQSPRNKVAVTGGKVTLSCNQTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTQKADIPDGYKASRPSQENFSLILELATPSQTSVYFCASG

Translated here from the nucleotide sequence; no source published a protein for this allele. i

Name history i: first seen IMGT 2013-01-20; formerly TRBV13-2*02 (to 2013-01-20); superseded by TRBV13-2*02 (274 nt); archived — removed from the current IMGT reference, kept reachable;

Allele names i

None.

Former IMGT names i

Former nameLast seen in IMGT release
TRBV13-2*022013-01-20

Contributed by IMGT. See Sources & citations for each source's version, citation and licence.

Find similar (nt · aa · cross-species) i

Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/MOUSE-VYY6575KU/similar?min_identity=0.95&kind=nt.