ORANGBOR-V3VGZYGLQ

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesPongo pygmaeus LocusIGH TypeV FunctionalTrue Length296 nt

IGHV5-88*01: a Pongo pygmaeus IGH V allele sequence, 296 nt, functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.

Species	Pongo pygmaeus (NCBITAXON:9600)
Locus / type	IGH / V
Functional i	True
Length	296 nt
Protein UID i	ORANGBOR-VP-CH3SNJ (shared by alleles with the same V-REGION amino-acid sequence)

Coding sequence (nt)

296 nt

GAGGTGCAGCTGGTGCAGTCTGGAGCAGAGGTGAAAAGGCCCGGGGAGTCTCTGAGGATCTCCTGTAAGACTTCTGGATACAGCTTTACCAGCTACTGGATCAGCTGGGTGCGCCAGATGCCCGGGAAAGGCCTGGAGTGGATGGGGAGCATCTATCCTGGTGACTCTGATACCAGATACAGCCCATCCTTCCAAGGCCACGTCACCATCTCAGCCGACAAGTCCATCAGCACCACCTACCTGCAGTGGAGCAGCCTGAAGGCCTCGGACACCGCCATGTATTACTGTGCAAAAGA

Amino-acid sequence (V-REGION)

98 aa

EVQLVQSGAEVKRPGESLRISCKTSGYSFTSYWISWVRQMPGKGLEWMGSIYPGDSDTRYSPSFQGHVTISADKSISTTYLQWSSLKASDTAMYYCAK

Published by the source, and consistent with the nucleotide sequence above. i

Name history i: stable — no former names, re-cuts, or archival on record.

Allele names i

Every name below denotes this exact sequence (ORANGBOR-V3VGZYGLQ). None is canonical; they are labels, and the UID is the key.

Name	Scheme	Source(s)
IGHV5-88*01	IMGT	IMGT

External records i

IMGT: IGHV5-88*01

Literature references 1 total · 1 sequence-in-paper i

PubMed publications linked to this allele. A sequence-in-paper match indicates that this allele's exact sequence was detected in the publication text or supplementary material; it is sequence-level evidence.

PMID	Title	Evidence	Source
40205052	Complete sequencing of ape genomes.	sequence in paper	literature_supp

Contributed by IMGT. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	CACAGTGAGAGAAACCAGCCCTGAGCCCATCTAAAACCC	IMGT	ORANGBOR-RIBG2N

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGGAGTCAACCGCCATCCTCGTCCTCCTCCTGGCTGTTCTCCAAGGAGTCTGTGCC	46 + 11 nt	IMGT	ORANGBOR-L4W6RN

Find similar (nt · aa · cross-species) i

Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/ORANGBOR-V3VGZYGLQ/similar?min_identity=0.95&kind=nt.

API: JSON · AIRR AlleleDescription · aliases