ORANGSUM-VAK2P23VC
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
TRGV9*01: a Pongo abelii TRG V allele sequence, 306 nt, functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Pongo abelii (NCBITAXON:9601) |
|---|---|
| Locus / type | TRG / V |
| Functional i | True |
| Length | 306 nt |
| Protein UID i | ORANGSUM-VP-ASUGRO (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Published by the source, and consistent with the nucleotide sequence above. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (ORANGSUM-VAK2P23VC). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| TRGV9*01 | IMGT | IMGT |
External records i
IMGT: TRGV9*01
Literature references i
PubMed publications linked to this allele. A sequence-in-paper match indicates that this allele's exact sequence was detected in the publication text or supplementary material; it is sequence-level evidence. Name-mentioned entries were auto-collected by name match and may refer to a different same-named allele; treat them as leads, not ground truth.
| PMID | Title | Evidence | Source |
|---|---|---|---|
| 40205052 | Complete sequencing of ape genomes. | sequence in paper | literature_supp |
| 23957733 | Fine mapping of V(D)J recombinase mediated rearrangements in human lymphoid malignancies. | name mentioned* | literature_supp |
| 35436998 | pmTR database: population matched (pm) germline allelic variants of T-cell receptor (TR) loci. | name mentioned* | literature_supp |
| 37056780 | Impact of BCG vaccination on the repertoire of human γδ T cell receptors. | name mentioned* | literature_supp |
| 38762584 | Invariant γδTCR natural killer-like effector T cells in the naked mole-rat. | name mentioned* | literature_supp |
| 40244697 | Single-cell transcriptional analysis reveals allergen-specific signatures in human γδ T cells. | name mentioned* | literature_supp |
| 40664667 | High-resolution mapping of single cells in spatial context. | name mentioned* | literature_supp |
| 40866291 | Spatial TCR clonality and clonal expansion in the in situ microenvironment of non-small cell lung cancer. | name mentioned* | literature_supp |
| 41021035 | The protective role of γδ T cells in endometrial cancer. | name mentioned* | literature_supp |
| 41306962 | Promiscuous class II-binding SARS-CoV-2-nuc derived vaccine-peptide induced extensive conventional, innate and unconventional T cell responses. | name mentioned* | literature_supp |
| 41766885 | Correction: Promiscuous class II-binding SARS-CoV-2-nuc derived vaccine-peptide induced extensive conventional, innate and unconventional T cell responses. | name mentioned* | literature_supp |
| 41898550 | Single-Cell Multi-Tissue T Cell Clonal Dynamics Reveal Distinct Immune Coercion Landscapes in MSI and MSS Colorectal Cancer. | name mentioned* | literature_supp |
* matched by allele name only. The publication mentions this name, but AIRBabel cannot determine from the name alone whether it refers to this allele; the same name can denote a different allele in another species. This is useful for literature review but is not verified evidence.
Contributed by IMGT. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | CACAGCAGCACACAGTTTGAGCCATCCCATTCAATAAAT | IMGT | ORANGSUM-RD75GC |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGCTGTCACTGCTCCACGCATCAACGCTGGCAGTCCTTGGGGCTTTGTGTGTATATGGT | 46 + 14 nt | IMGT | ORANGSUM-LNET52 |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/ORANGSUM-VAK2P23VC/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases