PIG-VDJ7SNPYD
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
TRBV24*01: a Sus scrofa TRB V allele sequence, 288 nt, functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
Earlier records of this allele i
IMGT has published this allele name over more than one sequence extent. Earlier sequence extents are deferred from default search results but remain resolvable, so a paper that cited one still leads here.
| Record | Name | Length | Relation to this record | IMGT releases |
|---|---|---|---|---|
| PIG-V6VT5PJEO | TRBV24*01 | 286 nt | contained in this record | 2019-03-01 |
| Species | Sus scrofa (NCBITAXON:9823) |
|---|---|
| Locus / type | TRB / V |
| Functional i | True |
| Length | 288 nt |
| Protein UID i | PIG-VP-BX53VM (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Published by the source, and consistent with the nucleotide sequence above. i
Name history i: re-cut from TRBV24*01 (286 nt);
Allele names i
Every name below denotes this exact sequence (PIG-VDJ7SNPYD). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| TRBV24*01 | IMGT | IMGT |
External records i
IMGT: TRBV24*01
Literature references i
PubMed publications linked to this allele. Name-mentioned entries were auto-collected by name match and may refer to a different same-named allele; treat them as leads, not ground truth.
| PMID | Title | Evidence | Source |
|---|---|---|---|
| 32868763 | Single-cell RNA sequencing identifies shared differentiation paths of mouse thymic innate T cells. | name mentioned* | literature_supp |
| 38762584 | Invariant γδTCR natural killer-like effector T cells in the naked mole-rat. | name mentioned* | literature_supp |
| 41941497 | Pigs lacking Natural Killer T cells have altered cellular responses to influenza. | name mentioned* | literature_supp |
* matched by allele name only. The publication mentions this name, but AIRBabel cannot determine from the name alone whether it refers to this allele; the same name can denote a different allele in another species. This is useful for literature review but is not verified evidence.
Contributed by IMGT. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | CATAGCACTTCCTGCCACCTGTTCTCTAAACAGAAAGG | IMGT | PIG-RXSVP4 |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGGGCTCCACGTGCCTCTGCTTTGTGGCCTTTTGCATCCTGGGAACAGGCTCCCTG | 49 + 8 nt | IMGT | PIG-L6OS6U |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/PIG-VDJ7SNPYD/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases