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PIG-VGMBQVDUJ

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

StatusArchived · seen 2015-03-19 → 2019-03-01 SpeciesSus scrofa LocusIGL TypeV FunctionalNone Length296 nt RecordSuperseded

a Sus scrofa IGL V allele sequence, 296 nt, not recorded, archived. The nucleotide and amino-acid sequence is below, with every recorded name and its source.

A newer source record exists for this allele designation. IGLV8-19*01 is still published by IMGT as PIG-V5NRDNJMC, 293 nt, a shorter cut contained in this sequence. This is the earlier record (296 nt, current in IMGT releases 2015-03-19–2019-03-01). The allele was not renamed and it was not withdrawn: IMGT changed the published sequence extent associated with this designation. Both extents are kept because a sequence is identified by its bases, so a change in extent is a different sequence.

SpeciesSus scrofa (NCBITAXON:9823)
Locus / typeIGL / V
Functional iNone
Length296 nt
Protein UID iPIG-VP-VWV6QC (shared by alleles with the same V-REGION amino-acid sequence)

Coding sequence (nt)

296 nt
TCTCAGACTGTGATCCAGGAGCCGGCGATGTCAGTGTCTCTTGGAGGGACCGTCACACTCACCTGTGCCTTTAGCTCTGGGTCAGTCACTAGTAGTAACAACCCTGGCTGGTTCCAGCAGACACCAGGCCAGCCTCCTCGAACTGTTATCTATCAAACAAACAACCGCCCGACTGGGGTCCCCAGTCGCTTCTCTGGAGCCATCTCTGGGAACAAAGCCACCCTCACCATCACGGGGGCCCAGGCTGAGGACGAGGCCGACTACTTCTGTGCTCTGGGGAAAAGTTGTACTAATGC

Amino-acid sequence (V-REGION)

98 aa
SQTVIQEPAMSVSLGGTVTLTCAFSSGSVTSSNNPGWFQQTPGQPPRTVIYQTNNRPTGVPSRFSGAISGNKATLTITGAQAEDEADYFCALGKSCTN

Translated here from the nucleotide sequence; no source published a protein for this allele. i

Name history i: first seen IMGT 2015-03-19; formerly IGLV8-19*01 (to 2015-03-19); superseded by IGLV8-19*01 (293 nt); archived — removed from the current IMGT reference, kept reachable;

Allele names i

None.

Former IMGT names i

Former nameLast seen in IMGT release
IGLV8-19*012015-03-19

Contributed by IMGT. See Sources & citations for each source's version, citation and licence.

Find similar (nt · aa · cross-species) i

Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/PIG-VGMBQVDUJ/similar?min_identity=0.95&kind=nt.