RABBIT-VIFQQX5ZR

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesOryctolagus cuniculus LocusTRA TypeV FunctionalTrue Length284 nt

TRAV42*01: a Oryctolagus cuniculus TRA V allele sequence, 284 nt, functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.

Species	Oryctolagus cuniculus (NCBITAXON:9986)
Locus / type	TRA / V
Functional i	True
Length	284 nt
Protein UID i	RABBIT-VP-2DGDU6 (shared by alleles with the same V-REGION amino-acid sequence)

Coding sequence (nt)

284 nt

GCCCAGGCTGTGACCCAGCCCGACAGTCACCGCGCTGTTGCCATAGGAGCCCCTCTGGAGCTGAGGTGCAAGTACTCATCTTCGCTGCCATCCTACCTGTTCTGGTACATGCGGTCCCCCAGCCAAGGCCTCCAGTTTCTCCTGAAGAGTACGCTGGGGAATGAGCGGTTTTCAGGCAGTAAAGGGTTTGAGGCTGAGTTGAGGCAGAATGAAAAGTCCTTCCTGCTGAGGAAACCCTCCGCCCACTGGAGCGACGCTGCGGAGTACTTTTGTGCTCTCACTGC

Amino-acid sequence (V-REGION)

94 aa

AQAVTQPDSHRAVAIGAPLELRCKYSSSLPSYLFWYMRSPSQGLQFLLKSTLGNERFSGSKGFEAELRQNEKSFLLRKPSAHWSDAAEYFCALT

Published by the source, and consistent with the nucleotide sequence above. i

Name history i: formerly TRAV45*01 (to 2018-09-27);

Allele names i

Every name below denotes this exact sequence (RABBIT-VIFQQX5ZR). None is canonical; they are labels, and the UID is the key.

Name	Scheme	Source(s)
TRAV42*01	IMGT	IMGT

Former IMGT names i

Former name	Last seen in IMGT release
*TRAV4501**	2018-09-27

External records i

IMGT: TRAV42*01

Contributed by IMGT. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	CACAGTCCCGCGGCCTTCGGGAGGAGCTGCACACAAACC	IMGT	RABBIT-RTRUHS

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGACCTTGGTATGCATCTGGATGCCGGGAGTGCTCCTGTTCCTGAGAGGAGCCAGA	46 + 11 nt	IMGT	RABBIT-LNPJNG

Find similar (nt · aa · cross-species) i

Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/RABBIT-VIFQQX5ZR/similar?min_identity=0.95&kind=nt.

API: JSON · AIRR AlleleDescription · aliases