RAT-JAM32LDER
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGLJ1P*01, IGLJ3P*01: a Rattus norvegicus IGL J allele sequence, 40 nt, not recorded. The nucleotide sequence is below, with every recorded name and its source.
| Species | Rattus norvegicus (NCBITAXON:10116) |
|---|---|
| Locus / type | IGL / J |
| Functional i | None |
| Length | 40 nt |
Coding sequence (nt)
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (RAT-JAM32LDER). None is canonical; they are labels, and the UID is the key.
Multiple allele designations. This one sequence is recorded under 2 different allele designations: IGLJ1P*01, IGLJ3P*01. These are identical normalized nucleotide sequences with different attributed names.
| Name | Scheme | Source(s) |
|---|---|---|
| IGLJ1P*01 | IMGT | IMGT |
| IGLJ3P*01 | IMGT | IMGT |
External records i
IMGT: IGLJ1P*01
Contributed by IMGT. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| j_rs | GGGTTTCGCTGTTTCATGTTTCCATTGCC | IMGT | RAT-R5AYDW |
| j_rs | GGTTTCGCTGTTTCATGTTTCCATTGCC | IMGT | RAT-RZUSSI |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/RAT-JAM32LDER/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases