RAT-VOS2NKST3

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesRattus norvegicus LocusIGH TypeV FunctionalTrue Length294 nt

IGHV1-36*01: a Rattus norvegicus IGH V allele sequence, 294 nt, functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.

Species	Rattus norvegicus (NCBITAXON:10116)
Locus / type	IGH / V
Functional i	True
Length	294 nt
Protein UID i	RAT-VP-TWNUJQ (shared by alleles with the same V-REGION amino-acid sequence)

Coding sequence (nt)

294 nt

CAGGTCAAGCTGCTGCAGTCTGGGGCTGCACTGGTGAAGCCTGGAGCCTCTGTGAAGATGTCTTGCAAAGCTTCTGGTTATACATTCACTGACTACTGGGTGAGCTGGGTGAAGCAGAGTCATGGAAAGAGCCTTGAGTGGATTGGGGAAATTTATCCTAACAGTGGTGCTACTAACTTCAATGAAAAGTTCAAGGGCAAGGCCACATTGACTGTAGACAAATCCACCAGCACAGCCTATATGGAGCTCAGCAGATTGACATCTGAGGACTCTGCAATCTATTACTGTACAAGA

Amino-acid sequence (V-REGION)

98 aa

QVKLLQSGAALVKPGASVKMSCKASGYTFTDYWVSWVKQSHGKSLEWIGEIYPNSGATNFNEKFKGKATLTVDKSTSTAYMELSRLTSEDSAIYYCTR

Published by the source, and consistent with the nucleotide sequence above. i

Name history i: stable — no former names, re-cuts, or archival on record.

Allele names i

Every name below denotes this exact sequence (RAT-VOS2NKST3). None is canonical; they are labels, and the UID is the key.

Name	Scheme	Source(s)
IGHV1-36*01	IMGT	IMGT

External records i

IMGT: IGHV1-36*01

Literature references 4 total · 4 name-mentioned* i

PubMed publications linked to this allele. Name-mentioned entries were auto-collected by name match and may refer to a different same-named allele; treat them as leads, not ground truth.

PMID	Title	Evidence	Source
36604758	Bacteroides-derived isovaleric acid enhances mucosal immunity by facilitating intestinal IgA response in broilers.	name mentioned^*	literature_supp
39698082	Comprehensive method for producing high-affinity mouse monoclonal antibodies of various isotypes against (4-hydroxy-3-nitrophenyl)acetyl (NP) hapten.	name mentioned^*	literature_supp
41410768	Convergent mutation trajectories convert functional self-tolerance in IGHV4-34 B cells to genetic tolerance encoded in the antibody.	name mentioned^*	literature_supp
41717442	Contrasted modifications of IgM and IgT repertoires induced by high- and low-virulent infectious pancreatic necrosis virus strains in rainbow trout (Oncorhynchus mykiss).	name mentioned^*	literature_supp

* matched by allele name only. The publication mentions this name, but AIRBabel cannot determine from the name alone whether it refers to this allele; the same name can denote a different allele in another species. This is useful for literature review but is not verified evidence.

Contributed by IMGT. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	CACAGTGTTAAAACCACATCCTGAGCATGTCAGAAACCC	IMGT	RAT-RUHF4D

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGGGATGGATCTGTATCATCTTTCTTGTGGCAACAGCTACAGGTGTCCACTCC	43 + 11 nt	IMGT	RAT-LDON5Q

Find similar (nt · aa · cross-species) i

Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/RAT-VOS2NKST3/similar?min_identity=0.95&kind=nt.

API: JSON · AIRR AlleleDescription · aliases