RAT-VZQPTD3JB
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHV5-28*01: a Rattus norvegicus IGH V allele sequence, 287 nt, not recorded. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Rattus norvegicus (NCBITAXON:10116) |
|---|---|
| Locus / type | IGH / V |
| Functional i | None |
| Length | 287 nt |
| Protein UID i | RAT-VP-BI5GA2 (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Translated here from the nucleotide sequence; no source published a protein for this allele. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (RAT-VZQPTD3JB). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHV5-28*01 | IMGT | IMGT |
External records i
IMGT: IGHV5-28*01
Contributed by IMGT. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | CACAGTGAGGAAATGTTACTGTGAGCTCAAACACAAATT | IMGT | RAT-R3RBX2 |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGAGGAATAGAAAAATTTGTTTTGTTTCATTATTTTGTTTACTTTTCTTGTGTCTGGTGT | 50 + 11 nt | IMGT | RAT-L2JUXM |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/RAT-VZQPTD3JB/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases