RHESUS-DH3LILN7U
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHD2-27*01, IGHD2-12*01, IGHD2-I4: a Macaca mulatta IGH D allele sequence, 31 nt, functional. The nucleotide sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / D |
| Functional i | True |
| Length | 31 nt |
Coding sequence (nt)
Name history i: formerly IGHD2-4*01 (to 2018-09-27);
Allele names i
Every name below denotes this exact sequence (RHESUS-DH3LILN7U). None is canonical; they are labels, and the UID is the key.
Multiple allele designations. This one sequence is recorded under 3 different allele designations: IGHD2-27*01, IGHD2-12*01, IGHD2-I4. These are identical normalized nucleotide sequences with different attributed names.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHD10-JYXZ*01 | IgLabel | MUSA |
| IGHD2-B4TS*05 | IgLabel | OGRDB |
| IGHD2-27*01 | IMGT | IMGT |
| IGHD2-12*01 | KIMDB | KIMDB |
| IGHD2-I4 | RhGLDB+ | RhGLDB+ |
Former IMGT names i
| Former name | Last seen in IMGT release |
|---|---|
| IGHD2-4*01 | 2018-09-27 |
External records i
genbank:MF989451: GENBANK:MF989451 GenBank: GENBANK:BK063715 IMGT: IGHD2-27*01 OGRDB: IGHD2-B4TS*05
Literature references i
PubMed publications linked to this allele.
Contributed by IMGT, KIMDB, MUSA, OGRDB, RhGLDB+. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| d_rs_3 | CACAGTGACACAGCCCCAGGCCCAAAGT | MUSA | RHESUS-RDZWT3 |
| d_rs_3 | CACAGTGACACAGCCCCAGGCCCAAAGC | IMGT MUSA | RHESUS-REZ2VB |
| d_rs_5 | GATTTTGTGGGGGGCTCGTGTCACTGTG | MUSA | RHESUS-R6LVXJ |
| d_rs_5 | GGATTTTGTGGGGGCTCGTGTCACTGTG | IMGT MUSA | RHESUS-RYVJKV |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Restricted for D genes: only 31 nt alleles are compared, position by position. D genes are too short (8–148 nt, median 19 nt) for edit-distance scores to be interpreted reliably; the metric can open gaps that inflate identity, and at 19 nt the 0.75 identity floor is about four mismatches. A D allele is therefore compared only against D alleles of exactly the same length, scored position by position. Alleles of the same gene that differ in length are not ranked here; separating those requires a multiple-sequence alignment, not a pairwise score.
Ranks D alleles of the same length,
by positional identity.
Also available at /api/sequences/RHESUS-DH3LILN7U/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases