RHESUS-DPQCA5X52
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / D |
| Functional i | True |
| Length | 28 nt |
Allele names i
Every name below denotes this exact sequence (RHESUS-DPQCA5X52). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHD3-VBVC*02 | IgLabel | OGRDB |
| IGHD3-VBVC*01_g18a | VDJbase | MUSA |
External records i
OGRDB: IGHD3-VBVC*02
Contributed by MUSA, OGRDB. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| d_rs_3 | CACAGTGTCACAGAGTCCATCAAAAACC | MUSA | RHESUS-RRN7WZ |
| d_rs_5 | GGTTTGAAGTGAGGTCTGTGTCACTGTG | MUSA | RHESUS-RJZAVJ |
Find similar alleles
Restricted for D genes: only 28 nt alleles are compared, position by position. D genes are too short (8–148 nt, median 19 nt) for edit-distance scores to be interpreted reliably; the metric can open gaps that inflate identity, and at 19 nt the 0.75 identity floor is about four mismatches. A D allele is therefore compared only against D alleles of exactly the same length, scored position by position. Alleles of the same gene that differ in length are not ranked here; separating those requires a multiple-sequence alignment, not a pairwise score.
Ranks D alleles of the same length,
by positional identity.
Also available at /api/sequences/RHESUS-DPQCA5X52/similar?min_identity=0.95&kind=nt.
Coding sequence (nt)
API: JSON · AIRR AlleleDescription · aliases