RHESUS-DZET5O6ZT
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHD4-35*01, IGHD4-25*01, LJI.Rh_IGHD4.25: a Macaca mulatta IGH D allele sequence, 16 nt, functional. The nucleotide sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / D |
| Functional i | True |
| Length | 16 nt |
Coding sequence (nt)
Name history i: formerly IGHD4-3*01 (to 2020-01-31);
Allele names i
Every name below denotes this exact sequence (RHESUS-DZET5O6ZT). None is canonical; they are labels, and the UID is the key.
Multiple allele designations. This one sequence is recorded under 3 different allele designations: IGHD4-35*01, IGHD4-25*01, LJI.Rh_IGHD4.25. These are identical normalized nucleotide sequences with different attributed names.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHD1-74CP*01 | IgLabel | OGRDB |
| IGHD4-74CP*01 | IgLabel | MUSA |
| IGHD4-35*01 | IMGT | IMGT |
| IGHD4-25*01 | KIMDB | KIMDB |
| LJI.Rh_IGHD4.25 | RhGLDB+ | RhGLDB+ |
Former IMGT names i
| Former name | Last seen in IMGT release |
|---|---|
| IGHD4-3*01 | 2020-01-31 |
External records i
GenBank: GENBANK:BK063715 IMGT: IGHD4-35*01 OGRDB: IGHD1-74CP*01
Literature references i
PubMed publications linked to this allele.
| PMID | Title | Evidence | Source |
|---|---|---|---|
| 31080066 | verified | MUSA |
Contributed by IMGT, KIMDB, MUSA, OGRDB, RhGLDB+. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| d_rs_3 | CACAGTGATGAATCCAGTGGCAAAAACT | MUSA | RHESUS-RGUEC3 |
| d_rs_3 | CACAGTGATGAACCCAGTGGCAAAAACT | MUSA | RHESUS-RKLDCF |
| d_rs_3 | CACAGTGATGAACCCAGCGGCAGAAACT | MUSA | RHESUS-RPS3LC |
| d_rs_3 | CACAGTGATGAACCCAGCGGCAAAAACT | IMGT MUSA | RHESUS-RVNAGK |
| d_rs_5 | GCTTTTTGTGAAGGGCCCTCCTACTGTG | IMGT MUSA | RHESUS-RAC52D |
| d_rs_5 | GCTTTTTCTGAAGGGCCCTCCTACTGTG | MUSA | RHESUS-RUWHJ4 |
| d_rs_5 | GCTTTTTGTGAAGGACCCTCCTACTGTG | MUSA | RHESUS-RUY5AY |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Restricted for D genes: only 16 nt alleles are compared, position by position. D genes are too short (8–148 nt, median 19 nt) for edit-distance scores to be interpreted reliably; the metric can open gaps that inflate identity, and at 19 nt the 0.75 identity floor is about four mismatches. A D allele is therefore compared only against D alleles of exactly the same length, scored position by position. Alleles of the same gene that differ in length are not ranked here; separating those requires a multiple-sequence alignment, not a pairwise score.
Ranks D alleles of the same length,
by positional identity.
Also available at /api/sequences/RHESUS-DZET5O6ZT/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases