RHESUS-V2JN25MND
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHV3-3PEF*19_i0gtcctccttg_g4t_g6-_c7-_g9a_g12a_t21a_g23a_g24c_g25a_c27a_g32a_t34a_g36a_g37c_c38g_a40c_c43a_t45c_g46a_g47a_g49a_g50a_g51t_c53-_c54-_g57c_c63g_c65t_g70a_c71a_t82g_87----90_a103-_g104-_c108a_t109a_t112a_a113g_c114a_116caagt120_g122t_g128a_c129g_c134a_c136t_g139c_g141a_a142c_g144a_c148t_a152t_t158-_160gataa164_t167a_t168a_g175t_g176c_t177a_g184t_t189a_c192t_a193t_i194tca_t199g_g202t_204tcct207_c209g_c210a_g213t_a214c_g216a_g220a_c222a_c228a_c231a_a232g_t235c_c236t_g243c_a245c_c246t_c248t_a250c_254--tg257_c259t_g261c_a263c_c265t_t266c_c268g_a270g_g273a_a275t_c276t_g278a_a285c_t288c_g289c_c296t_g298t_307--------------320: a Macaca mulatta IGH V allele sequence, 282 nt, non-functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / V |
| Functional i | False |
| Length | 282 nt |
| Protein UID i | RHESUS-VP-DX3US4 (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Translated here from the nucleotide sequence; no source published a protein for this allele. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (RHESUS-V2JN25MND). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHV3-3PEF*19_i0gtcctccttg_g4t_g6-_c7-_g9a_g12a_t21a_g23a_g24c_g25a_c27a_g32a_t34a_g36a_g37c_c38g_a40c_c43a_t45c_g46a_g47a_g49a_g50a_g51t_c53-_c54-_g57c_c63g_c65t_g70a_c71a_t82g_87----90_a103-_g104-_c108a_t109a_t112a_a113g_c114a_116caagt120_g122t_g128a_c129g_c134a_c136t_g139c_g141a_a142c_g144a_c148t_a152t_t158-_160gataa164_t167a_t168a_g175t_g176c_t177a_g184t_t189a_c192t_a193t_i194tca_t199g_g202t_204tcct207_c209g_c210a_g213t_a214c_g216a_g220a_c222a_c228a_c231a_a232g_t235c_c236t_g243c_a245c_c246t_c248t_a250c_254--tg257_c259t_g261c_a263c_c265t_t266c_c268g_a270g_g273a_a275t_c276t_g278a_a285c_t288c_g289c_c296t_g298t_307--------------320 | VDJbase | MUSA |
Contributed by MUSA. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | TACTGTGAGGGGACATCTGTCTGAGCTCAGACACAAAAC | MUSA | RHESUS-RSW3HB |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGGGGTGTGTGCTGATCTGGGCTTCTCTTGTCATCACCCTCAATACCTCTGTGTGTGCAGAA | 46 + 17 nt | MUSA | RHESUS-LA4KPN |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/RHESUS-V2JN25MND/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases