RHESUS-V3VJXJ2YH

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMacaca mulatta LocusIGH TypeV FunctionalTrue Length302 nt

Species	Macaca mulatta (NCBITAXON:9544)
Locus / type	IGH / V
Functional i	True
Length	302 nt
Protein UID i	RHESUS-VP-W5SHK2 (shared by alleles with the same V-REGION amino-acid sequence)

Allele names i

Every name below denotes this exact sequence (RHESUS-V3VJXJ2YH). None is canonical; they are labels, and the UID is the key.

Multiple allele designations. This one sequence is recorded under 3 different allele designations: IGHV3-128*02, LJI.Rh_IGHV3.128.a, IGHV3-ABY-S*03_S7885. These are identical normalized nucleotide sequences with different attributed names.

Name	Scheme	Source(s)
IGHV9-2SFB*05	IgLabel	MUSA
IGHV9-65SO*17	IgLabel	OGRDB
IGHV3-128*02	KIMDB	KIMDB
LJI.Rh_IGHV3.128.a	RhGLDB+	RhGLDB+
IGHV3-ABY-S*03_S7885	VRC	VRC

External records i

OGRDB: IGHV9-65SO*17

Literature references 3 total · 1 verified · 2 sequence-in-paper i

PubMed publications linked to this allele. A sequence-in-paper match indicates that this allele's exact sequence was detected in the publication text or supplementary material; it is sequence-level evidence.

PMID	Title	Evidence	Source
31080066		verified	MUSA
32866207	Mapping the immunogenic landscape of near-native HIV-1 envelope trimers in non-human primates.	sequence in paper	literature_supp
35419009	Addressing IGHV Gene Structural Diversity Enhances Immunoglobulin Repertoire Analysis: Lessons From Rhesus Macaque.	sequence in paper	literature_supp

Contributed by KIMDB, MUSA, OGRDB, RhGLDB+, VRC. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	CACAGTGAGGCGAGGTCAGTGTGAGCCCAGACACAAACC	MUSA	RHESUS-RF7LCK

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGGAGTTGGGGCTGAGCTGGGTTTTCCTTGTTGCTCTTTTAAAAGGTGTGTCCAGTGT	48 + 11 nt	MUSA	RHESUS-L44MUI

Find similar alleles

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/RHESUS-V3VJXJ2YH/similar?min_identity=0.95&kind=nt.

Coding sequence (nt)

302 nt

GAGGTGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTCCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTGACCACTACATGTACTGGGTCCGCCAGGCTCCAGGAAAGGGGCTGGAGTGGGTGGGTTTCATTAGAAGCAAAGCTTACGGTGGGACAGCAGAATACGCCGCGTCTGTGAAAGGCAGATTCACCATCTCCAGAGATGATTCCAAAAGCATCGCCTATCTGCAAATGAACAGCCTGAAAACCGAGGACACGGCCGTGTATTACTGTACTAGGGA

Amino-acid sequence (V-REGION)

100 aa

EVQLVESGGGLVQPGGSLRLSCAASGFTFSDHYMYWVRQAPGKGLEWVGFIRSKAYGGTAEYAASVKGRFTISRDDSKSIAYLQMNSLKTEDTAVYYCTR

Translated here from the nucleotide sequence; no source published a protein for this allele. i

API: JSON · AIRR AlleleDescription · aliases