RHESUS-V4F2SBUPQ

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMacaca mulatta LocusIGL TypeV FunctionalTrue Length290 nt

Species	Macaca mulatta (NCBITAXON:9544)
Locus / type	IGL / V
Functional i	True
Length	290 nt
Protein UID i	RHESUS-VP-G2GTG5 (shared by alleles with the same V-REGION amino-acid sequence)

Allele names i

Every name below denotes this exact sequence (RHESUS-V4F2SBUPQ). None is canonical; they are labels, and the UID is the key.

Multiple allele designations. This one sequence is recorded under 2 different allele designations: IGLV3-29*01, IGLV3-S11. These are identical normalized nucleotide sequences with different attributed names.

Name	Scheme	Source(s)
IGLV13-3ETT*08	IgLabel	MUSA
IGLV13-RM6H*04	IgLabel	OGRDB
IGLV3-29*01	IMGT	IMGT
IGLV3-S11	RhGLDB+	RhGLDB+

Other names & identifiers

Alternative and former names, e.g. IMGT clone names, plus accession identifiers.

Name	Kind	Source(s)
BK063717.1	NCBI accession	ncbi_nucleotide

Former IMGT names i

Former name	Last seen in IMGT release
*IGLV3-401**	2019-03-01

External records i

genbank:IMGT000062: GENBANK:IMGT000062 genbank:KY199323: GENBANK:KY199323 genbank:MF043839: GENBANK:MF043839 NCBI nucleotide: link GenBank: GENBANK:BK063717 GenBank: GENBANK:BK063717.1 IMGT: IGLV3-29*01 OGRDB: IGLV13-RM6H*04

Literature references 10 total · 4 verified · 3 sequence-in-paper · 3 name-mentioned* i

PubMed publications linked to this allele. A sequence-in-paper match indicates that this allele's exact sequence was detected in the publication text or supplementary material; it is sequence-level evidence. Name-mentioned entries were auto-collected by name match and may refer to a different same-named allele; treat them as leads, not ground truth.

PMID	Title	Evidence	Source
25319543		verified	MUSA
27525066		verified	MUSA
34875068		verified	ncbi_nucleotide
35335026		verified	ncbi_nucleotide
32866207	Mapping the immunogenic landscape of near-native HIV-1 envelope trimers in non-human primates.	sequence in paper	literature_supp
38707998	Maintenance of caecal homeostasis by diverse adaptive immune cells in the rhesus macaque.	sequence in paper	literature_supp
39068149	Multi-compartmental diversification of neutralizing antibody lineages dissected in SARS-CoV-2 spike-immunized macaques.	sequence in paper	literature_supp
28813462	A comprehensive profiling of T- and B-lymphocyte receptor repertoires from a Chinese-origin rhesus macaque by high-throughput sequencing.	name mentioned^*	literature_supp
36328595	Myeloma immunoglobulin rearrangement and translocation detection through targeted capture sequencing.	name mentioned^*	literature_supp
41021799	Molecular divergence and convergence of mammalian antibody responses to the influenza virus hemagglutinin stem.	name mentioned^*	literature_supp

* matched by allele name only. The publication mentions this name, but AIRBabel cannot determine from the name alone whether it refers to this allele; the same name can denote a different allele in another species. This is useful for literature review but is not verified evidence.

Contributed by IMGT, MUSA, OGRDB, RhGLDB+, ncbi_nucleotide. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	CACAGTGACACAGGCAGATGGGGAAGTGAGACCAAAACA	IMGT MUSA	RHESUS-RV3G2A

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGGCCTGGACCCTTCTCCTCCTCGGCCTCCTCGCTCACTGCACAGGCTCTGCGGCC	46 + 11 nt	IMGT	RHESUS-LBHSM2
ATGGCCTGGACCCTTCTCCTCCTCGGCCTCCTCGCTCACTGCACAGGTGCTCTGCGGCC	48 + 11 nt	MUSA	RHESUS-LGRTCJ

Find similar alleles

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/RHESUS-V4F2SBUPQ/similar?min_identity=0.95&kind=nt.

Coding sequence (nt)

290 nt

TCCTATGATGTGACTCAGCCACGCTCAGTGTCTGTGTCCCCAGGACAGACGGCCAGGATCACCTGTGGGGGAGACAACATTGGAAGTAAAGTTGTGCACTGGTACCAGCAGAAGCCAGCGCAGGCCCCTGTGCTGGTCATCTATAGAGATAGCAAACGGCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCAGGGAACACGGCCACCCTGACCATCAGCGGGGTCGAGGCCGGGGATGAGGCTGACTATTACTGTCAGGTGTGGGACAGTAGTAGTGATCATCC

Amino-acid sequence (V-REGION)

96 aa

SYDVTQPRSVSVSPGQTARITCGGDNIGSKVVHWYQQKPAQAPVLVIYRDSKRPSGIPERFSGSNSGNTATLTISGVEAGDEADYYCQVWDSSSDH

Published by the source, and consistent with the nucleotide sequence above. i

API: JSON · AIRR AlleleDescription · aliases