RHESUS-V5AQDQ65P

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMacaca mulatta LocusIGH TypeV FunctionalTrue Length293 nt

Species	Macaca mulatta (NCBITAXON:9544)
Locus / type	IGH / V
Functional i	True
Length	293 nt
Protein UID i	RHESUS-VP-4ZZIA4 (shared by alleles with the same V-REGION amino-acid sequence)

Allele names i

Every name below denotes this exact sequence (RHESUS-V5AQDQ65P). None is canonical; they are labels, and the UID is the key.

Multiple allele designations. This one sequence is recorded under 3 different allele designations: IGHV3-132*04, IGHV3-100*01_S4375, IGHV3-AFY*02. These are identical normalized nucleotide sequences with different attributed names.

Name	Scheme	Source(s)
IGHV3-3UBQ*06	IgLabel	MUSA
IGHV3-DCTO*07	IgLabel	OGRDB
IGHV3-132*04	IMGT	IMGT
IGHV3-100*01_S4375	KIMDB	KIMDB
IGHV3-AFY*02	RhGLDB+	RhGLDB+

Other names & identifiers

Alternative and former names, e.g. IMGT clone names, plus accession identifiers.

Name	Kind	Source(s)
MT542441.1	NCBI accession	ncbi_nucleotide

External records i

genbank:MF989601: GENBANK:MF989601 NCBI nucleotide: link GenBank: GENBANK:MT542441 GenBank: GENBANK:MT542441.1 IMGT: IGHV3-132*04 OGRDB: IGHV3-DCTO*07

Literature references 8 total · 2 verified · 2 sequence-in-paper · 4 name-mentioned* i

PubMed publications linked to this allele. A sequence-in-paper match indicates that this allele's exact sequence was detected in the publication text or supplementary material; it is sequence-level evidence. Name-mentioned entries were auto-collected by name match and may refer to a different same-named allele; treat them as leads, not ground truth.

PMID	Title	Evidence	Source
29163486		verified	MUSA
33484642		verified	ncbi_nucleotide
32866207	Mapping the immunogenic landscape of near-native HIV-1 envelope trimers in non-human primates.	sequence in paper	literature_supp
35419009	Addressing IGHV Gene Structural Diversity Enhances Immunoglobulin Repertoire Analysis: Lessons From Rhesus Macaque.	sequence in paper	literature_supp
36131022	Long-primed germinal centres with enduring affinity maturation and clonal migration.	name mentioned^*	literature_supp
38707998	Maintenance of caecal homeostasis by diverse adaptive immune cells in the rhesus macaque.	name mentioned^*	literature_supp
39068149	Multi-compartmental diversification of neutralizing antibody lineages dissected in SARS-CoV-2 spike-immunized macaques.	name mentioned^*	literature_supp
41392054	Necessity of individual VDJ-databases for annotating antibody heavy chain characteristics in non-human primates.	name mentioned^*	literature_supp

* matched by allele name only. The publication mentions this name, but AIRBabel cannot determine from the name alone whether it refers to this allele; the same name can denote a different allele in another species. This is useful for literature review but is not verified evidence.

Contributed by IMGT, KIMDB, MUSA, OGRDB, RhGLDB+, ncbi_nucleotide. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	CACAGTGAGGGGAAGTCAATGTGAGCCCAGACACAAACC	MUSA	RHESUS-RC2IIL
v_rs	CACAGTGAGGGGAAGTCAATGTGAGCCCAGACA	IMGT	RHESUS-RW62NH

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGGAGTTTATGCTGAGCTGGGTTTTCCTTGTTGCTATATTAAAAGGTGTCCAGTGT	46 + 11 nt	IMGT	RHESUS-L4DSM2
ATGGAGTTTATGCTGAGCTGGGTTTTCCTTGTTGCTATATTAAAAGGTGTGTCCAGTGT	48 + 11 nt	MUSA	RHESUS-LG7KVA

Find similar alleles

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/RHESUS-V5AQDQ65P/similar?min_identity=0.95&kind=nt.

Coding sequence (nt)

293 nt

GTGGAGCAGCTGGTGGAGTCTGGGGGAGGCTTGGTACAGCCTGGGGCGTCCCTGAGACTCTCCTGTGCAGCCTCTGAATTCACCTTCAGTAGCTATGACATGCACTGGGTTCGCCAGGCTCCAGGGAAGGGTCTGGAGTGGGTATCAGCTATTAGCATTGGCGGTGGCACATACTACCCAGACTCTGTGAAGGGTCGATTCACCATCTCCAGAGACAATGCCAAGAACTCCTTGTATCTTCAAATGAACAGCCTGAGAGCTGAGGACACTGCTGTGTATTATTGTGCAAGAGA

Amino-acid sequence (V-REGION)

97 aa

VEQLVESGGGLVQPGASLRLSCAASEFTFSSYDMHWVRQAPGKGLEWVSAISIGGGTYYPDSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCAR

Published by the source, and consistent with the nucleotide sequence above. i

API: JSON · AIRR AlleleDescription · aliases