RHESUS-V5GXT5RZJ

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMacaca mulatta LocusIGH TypeV FunctionalTrue Length301 nt

Species	Macaca mulatta (NCBITAXON:9544)
Locus / type	IGH / V
Functional i	True
Length	301 nt
Protein UID i	RHESUS-VP-C4YHSN (shared by alleles with the same V-REGION amino-acid sequence)

Allele names i

Every name below denotes this exact sequence (RHESUS-V5GXT5RZJ). None is canonical; they are labels, and the UID is the key.

Multiple allele designations. This one sequence is recorded under 3 different allele designations: IGHV2-174*01, IGHV2-ABU*01_S6524, IGHV2-ABU-S*01_S6524. These are identical normalized nucleotide sequences with different attributed names.

Name	Scheme	Source(s)
IGHV2-3D4X*05	IgLabel	OGRDB
IGHV2-3D4X*11	IgLabel	MUSA
IGHV2-174*01	IMGT	IMGT
IGHV2-ABU*01_S6524	RhGLDB+	RhGLDB+
IGHV2-ABU-S*01_S6524	VRC	VRC

Other names & identifiers

Alternative and former names, e.g. IMGT clone names, plus accession identifiers.

Name	Kind	Source(s)
BK063715.1	NCBI accession	ncbi_nucleotide

External records i

NCBI nucleotide: link GenBank: GENBANK:BK063715 GenBank: GENBANK:BK063715.1 IMGT: IGHV2-174*01 OGRDB: IGHV2-3D4X*05

Literature references 4 total · 2 verified · 2 sequence-in-paper i

PubMed publications linked to this allele. A sequence-in-paper match indicates that this allele's exact sequence was detected in the publication text or supplementary material; it is sequence-level evidence.

PMID	Title	Evidence	Source
34875068		verified	ncbi_nucleotide
35335026		verified	ncbi_nucleotide
35419009	Addressing IGHV Gene Structural Diversity Enhances Immunoglobulin Repertoire Analysis: Lessons From Rhesus Macaque.	sequence in paper	literature_supp
41392054	Necessity of individual VDJ-databases for annotating antibody heavy chain characteristics in non-human primates.	sequence in paper	literature_supp

Contributed by IMGT, MUSA, OGRDB, RhGLDB+, VRC, ncbi_nucleotide. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	CACAGAGACACAGCCCAGGGCACCTCCTGTACAAGAACC	IMGT MUSA	RHESUS-R2F3BA

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGGACACGCTTTGCTCCACGCTCCTGCTGCTGACCGTCCCGTCCTGGGTCTTGTCC	46 + 11 nt	IMGT	RHESUS-L3AWK4
ATGGACACGCTTTGCTCCACGCTCCTGCTGCTGACCGTCCCGTCCTGTGGGTCTTGTCC	48 + 11 nt	MUSA	RHESUS-LMLAO4

Find similar alleles

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/RHESUS-V5GXT5RZJ/similar?min_identity=0.95&kind=nt.

Coding sequence (nt)

301 nt

CAGGTCACCTTGAAGGAGTCTGGTCCTGCGCTGGTGAAACCCACACAGACCCTCACGCTGACCTGCACCTTCTCTGGGTTCTCACTCACCACTAGTGGTATGGGTGTGGGCTGGATCCGTCAGCCCCCAGGGAAGGCCCTGGAGTGGCTGGCACTCATTTATTGGGATGATGATAAGCGCTACAGCACATCTCTGAAGAGCAGGCTCACCATCTCCAAGGACACCTCCAAGAACCAGGTTGTCCTTACAATGACCAACATGGACCCTGTGGACACAGCCACATATTACTGTGCACGGGGAG

Amino-acid sequence (V-REGION)

100 aa

QVTLKESGPALVKPTQTLTLTCTFSGFSLTTSGMGVGWIRQPPGKALEWLALIYWDDDKRYSTSLKSRLTISKDTSKNQVVLTMTNMDPVDTATYYCARG

Published by the source, and consistent with the nucleotide sequence above. i

API: JSON · AIRR AlleleDescription · aliases