RHESUS-V6TP5AMUO

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMacaca mulatta LocusIGH TypeV FunctionalTrue Length296 nt

IGHV1-NL_2*01_S5797, IGHV1-AFG*01_S5797, IGHV1-AFG-S*01_S5797: a Macaca mulatta IGH V allele sequence, 296 nt, functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.

Species	Macaca mulatta (NCBITAXON:9544)
Locus / type	IGH / V
Functional i	True
Length	296 nt
Protein UID i	RHESUS-VP-2UISN3 (shared by alleles with the same V-REGION amino-acid sequence)

Coding sequence (nt)

296 nt

CAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGATCCTCAGTGAAGGTCTCCTGCAAGGCTTCCGGATACACCTTCACTGATTACTACATGCACTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGAAATCAACCCAAAAACTGGTGGCACAAACTATGCACAGAAGTTCCAGGGCAGAGTCACCATGACCAGAGACACATCGACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGAGAGAGA

Amino-acid sequence (V-REGION)

98 aa

QVQLVQSGAEVKKPGSSVKVSCKASGYTFTDYYMHWVRQAPGQGLEWMGEINPKTGGTNYAQKFQGRVTMTRDTSTSTAYMELSSLRSEDTAVYYCER

Translated here from the nucleotide sequence; no source published a protein for this allele. i

Name history i: stable — no former names, re-cuts, or archival on record.

Allele names i

Every name below denotes this exact sequence (RHESUS-V6TP5AMUO). None is canonical; they are labels, and the UID is the key.

Multiple allele designations. This one sequence is recorded under 3 different allele designations: IGHV1-NL_2*01_S5797, IGHV1-AFG*01_S5797, IGHV1-AFG-S*01_S5797. These are identical normalized nucleotide sequences with different attributed names.

Name	Scheme	Source(s)
IGHV1-2BLY*08	IgLabel	MUSA
IGHV1-VCNV*05	IgLabel	OGRDB
IGHV1-NL_2*01_S5797	KIMDB	KIMDB
IGHV1-AFG*01_S5797	RhGLDB+	RhGLDB+
IGHV1-AFG-S*01_S5797	VRC	VRC

External records i

OGRDB: IGHV1-VCNV*05

Literature references 1 total · 1 sequence-in-paper i

PubMed publications linked to this allele. A sequence-in-paper match indicates that this allele's exact sequence was detected in the publication text or supplementary material; it is sequence-level evidence.

PMID	Title	Evidence	Source
35419009	Addressing IGHV Gene Structural Diversity Enhances Immunoglobulin Repertoire Analysis: Lessons From Rhesus Macaque.	sequence in paper	literature_supp

Contributed by KIMDB, MUSA, OGRDB, RhGLDB+, VRC. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	CACAGTGTAAAAACCACATCCTAAGAGTGTCAGAAACC	MUSA	RHESUS-RD3UTE

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGGACTGGACATGGAGGCTCCTCCTCTTGGTGGCAGCAGCTACAGGTGTGCCCACTCC	48 + 11 nt	MUSA	RHESUS-LMLM23

Find similar (nt · aa · cross-species) i

Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/RHESUS-V6TP5AMUO/similar?min_identity=0.95&kind=nt.

API: JSON · AIRR AlleleDescription · aliases