RHESUS-V6XNKCPMF
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGLV3-BR3M*04_t3c_a13g_a27g_t28g_g43t_g44t_c50t_a51g_t53c_i54agg_a72g_c78t_a79g_c82a_c84a_a85g_g107a_t111c_t114c_g115a_g119a_a125g_a143g_g144a_c149t_t150a_g153a_c154g_t155g_g160a_t161c_a164g_a169-_a170-_c171-_c205t_g207t_g228c_c229a_g230a_g245a_c246a_g251a_a252g_c255g_c257a_a258g_t261c_t262a_c263t_t265c_g280a_g288t_g297a_t300c_g301a_g311t_g313-_a314-_317atcac321_c336t_342cacagtgacatcactcatcc361: a Macaca mulatta IGL V allele sequence, 308 nt, non-functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGL / V |
| Functional i | False |
| Length | 308 nt |
| Protein UID i | RHESUS-VP-OB3D6N (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Translated here from the nucleotide sequence; no source published a protein for this allele. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (RHESUS-V6XNKCPMF). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| IGLV3-BR3M*04_t3c_a13g_a27g_t28g_g43t_g44t_c50t_a51g_t53c_i54agg_a72g_c78t_a79g_c82a_c84a_a85g_g107a_t111c_t114c_g115a_g119a_a125g_a143g_g144a_c149t_t150a_g153a_c154g_t155g_g160a_t161c_a164g_a169-_a170-_c171-_c205t_g207t_g228c_c229a_g230a_g245a_c246a_g251a_a252g_c255g_c257a_a258g_t261c_t262a_c263t_t265c_g280a_g288t_g297a_t300c_g301a_g311t_g313-_a314-_317atcac321_c336t_342cacagtgacatcactcatcc361 | VDJbase | MUSA |
Contributed by MUSA. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | CACAGTGACACAGGCAGATGAGGAGATTAGACAAATACA | MUSA | RHESUS-RNX3ZN |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGGCCTGGACCCCTCCCCTGCTCACCCTCCTCACTCTCTGCACAGGTGCTCCGTGGTT | 48 + 11 nt | MUSA | RHESUS-LHYIMJ |
| ATGGCCTGGACCCCTCCCCTGCTCACCTTCCTCACTCTCTGCACAGCTGCTCCGTGGTT | 48 + 11 nt | MUSA | RHESUS-LMQSG4 |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/RHESUS-V6XNKCPMF/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases